View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_16 (Length: 431)
Name: NF17318_low_16
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 5 - 418
Target Start/End: Complemental strand, 54531326 - 54530913
Alignment:
| Q |
5 |
cccctaaggttagttttcttcttaaattttgatgcccttgtttctatttttgatttttccactttaatgatgtataaagtcgttaatttgttaattttat |
104 |
Q |
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| T |
54531326 |
cccctaaggttagttttcttcttcaattttgatgcccttgtttctatttttgatttatccactttaatgatgtataaagtcgttaatttgttaattttat |
54531227 |
T |
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| Q |
105 |
cgttgttggttttttatttcatgtgtttactgatagtgccttttatgtgtttgtgaaaattcctgaaagatctctttttctgctacggatgttgatgtga |
204 |
Q |
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| T |
54531226 |
cgttgtgggttttttattttatgtgtttactgatagtgccttttatgtgtttgtgaaaattcctgaaagatctctttttctgctacggatgttgatgtga |
54531127 |
T |
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| Q |
205 |
ctgaatggaaaggagatatactagcagtgggtgttactgagaaagatttaacaagagatgctaaatcgagattcgagaattcgattttgaacaagattga |
304 |
Q |
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| T |
54531126 |
ctgaatggaaaggagatatactagcagtgggtgttactgagaaagatttaacaagagatgctaaatcgagattcgagaattcgattttgaacaagattga |
54531027 |
T |
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| Q |
305 |
tttgaagttggatggtttgttatctgaagcttcttctgaagaggatttctctggtaaagttggtcaatcaacggttgttaggattaaaggacttggatca |
404 |
Q |
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| T |
54531026 |
tttgaagttggatggtttgttatctgaagcttcttctgaagaggatttctctggtaaagttggtcaatcaacggttgttaggattaaaggacttggatca |
54530927 |
T |
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| Q |
405 |
aagagggttggttt |
418 |
Q |
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| T |
54530926 |
aagagggttggttt |
54530913 |
T |
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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 252 - 344
Target Start/End: Complemental strand, 14243450 - 14243358
Alignment:
| Q |
252 |
ttaacaagagatgctaaatcgagattcgagaattcgattttgaacaagattgatttgaagttggatggtttgttatctgaagcttcttctgaa |
344 |
Q |
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| T |
14243450 |
ttaaaaagagatgcaaaatcgagatttgagaattcgattttgaacaagattgatttaaagttggatggtttgttatctgaagcttcttctgaa |
14243358 |
T |
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