View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_18 (Length: 407)
Name: NF17318_low_18
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 13409976 - 13410366
Alignment:
| Q |
14 |
aatataagaacacactatgccatctaaatgcaaaagaattttcaactttccacacaatcaaagatgtggtctaaatggtcttactc--acatggcgagtc |
111 |
Q |
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| T |
13409976 |
aatataagaacacactatgccatctaaatgcaaaagaattttgaactttccacacaatcaaagatgtagtctaaatggtcttactctcacatggcgagtc |
13410075 |
T |
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| Q |
112 |
caaggcaaggtaaggcttatagctaggtgaggcctcatagtaattacaaaatacataacagcaccaacaacctataggtgaggcctgaagtgaatagatt |
211 |
Q |
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| T |
13410076 |
caaggcaaggtaaggcttatagctaggtgaggcctcatagtaattaaaaaatacataacagcaccaacaacatataggtgaggcctgaagtgaatatatt |
13410175 |
T |
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| Q |
212 |
catattagtctccaattattagcaatgcagtaacaataattatt-nnnnnnntgcaataagtaatgctatattgagtaactcattaaaacagaagataaa |
310 |
Q |
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| T |
13410176 |
cataatagtctcc-attattagcaatgcagtaacaataattattaaaaaaaatgcaataagtaatgctatattgagtaactcattaaaacagaagataaa |
13410274 |
T |
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| Q |
311 |
caaaataccttttacaggttgttggaagtacatgtacaattttctagtcaaaatgaaccataacctcattctagtatgagattaaaaatgcc |
402 |
Q |
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| T |
13410275 |
caaaatacctttaacagattgttggaagtacatgtacaattttctggtcaaaatgaaccatagcctcattctggtatgagattaaaaatgcc |
13410366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 3276751 - 3276563
Alignment:
| Q |
217 |
tagtctccaattattagcaatgcagtaacaataattattnnnnnnntgcaataagtaatgctatattgagtaactcattaaaacagaagataaacaaaat |
316 |
Q |
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| T |
3276751 |
tagtctcca-ttattagcaatgcagtaacaataattattaaatacatgcaataagtaatgcta-attgagtaactcattgaaacagaagataaacaaaat |
3276654 |
T |
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| Q |
317 |
accttttacaggttgttggaagtacatgtacaattttctagtcaaaatgaaccataacctcattctagtatgagattaaaaatgcccgtaa |
407 |
Q |
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| T |
3276653 |
acctttaacaggttgttggaggtgcatgtacaattttcgggtcaaaatgaaccatagcctcattctggtatgagattaaaaatgcccgtaa |
3276563 |
T |
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