View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_low_19 (Length: 397)

Name: NF17318_low_19
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_low_19
NF17318_low_19
[»] chr3 (5 HSPs)
chr3 (13-308)||(21498515-21498799)
chr3 (118-248)||(21468798-21468928)
chr3 (43-104)||(41259934-41259995)
chr3 (79-107)||(46798683-46798711)
chr3 (76-104)||(55494787-55494815)
[»] chr5 (1 HSPs)
chr5 (138-251)||(40921247-40921360)
[»] chr1 (1 HSPs)
chr1 (34-104)||(8757255-8757325)
[»] chr7 (3 HSPs)
chr7 (43-104)||(41780525-41780586)
chr7 (42-107)||(27731356-27731421)
chr7 (79-107)||(3766916-3766944)
[»] chr4 (5 HSPs)
chr4 (42-110)||(39691523-39691591)
chr4 (52-97)||(1020158-1020203)
chr4 (161-249)||(55564268-55564356)
chr4 (34-104)||(50578615-50578686)
chr4 (42-104)||(50263971-50264033)
[»] chr2 (3 HSPs)
chr2 (42-104)||(31068874-31068936)
chr2 (79-107)||(38581572-38581600)
chr2 (76-104)||(45407348-45407376)
[»] chr8 (3 HSPs)
chr8 (42-104)||(15837204-15837266)
chr8 (42-104)||(28300152-28300214)
chr8 (79-107)||(43085160-43085188)
[»] chr6 (3 HSPs)
chr6 (42-104)||(5925646-5925708)
chr6 (73-111)||(7215090-7215128)
chr6 (34-104)||(7326312-7326382)
[»] scaffold0366 (1 HSPs)
scaffold0366 (48-107)||(797-857)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 21498799 - 21498515
Alignment:
Q  13 aatatgcatgggacacggtctgaaccctagattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaataataata 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  21498799 aatatgcatgggacagggtctgaaccctagattccccacttctacacacttaaa-tgtgcgaatccaaccactaggctacttgaccaaaaattaataata 21498701  T
Q  113 taaataatcgagaatggatcaaaccacttgcctggataactattttgaagcatatgtttaataaaagttgttttcccagttgagtattgacccaaaagca 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21498700 taaataatcgagaatggatcaaaccacatgcctggataactattttgaagcatatgtttaataaaagttgttttcccagttgagtattgacccaaaagca 21498601  T
Q  213 gaaccataggtttggcatcaaaatcactatctgtctgcaaaaatcaatagtgaaattaagtgaatatgttagttgatattttaaacacggcgaaaa 308  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||          ||| |||||||||||||||||||||||||| |||||||    
T  21498600 gaaccataggtttggcatcaaagtcactatctgtctgcaaaaatcaat----------agttaatatgttagttgatattttaaacacagcgaaaa 21498515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 21468928 - 21468798
Alignment:
Q  118 aatcgagaatggatcaaaccacttgcctggataactattttgaagcatatgtttaataaaagttgttttcccagttgagtattgacccaaaagcagaacc 217  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  21468928 aatcgagaatggatcaaactacttgcctggataactactttgaagcatatgtttaataaaagttgttttcccggttgagtattgacccaaaagcataacc 21468829  T
Q  218 ataggtttggcatcaaaatcactatctgtct 248  Q
    ||||||||||||||||||||||||| |||||    
T  21468828 ataggtttggcatcaaaatcactatttgtct 21468798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 41259995 - 41259934
Alignment:
Q  43 attccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    ||||||||||||| ||||| ||| ||||| ||||| | ||||||||||||||||| ||||||    
T  41259995 attccccacttctccacacataatgtgtgtgaatctagccactaggctacttgactaaaaaa 41259934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 46798683 - 46798711
Alignment:
Q  79 aaccactaggctacttgaccaaaaaataa 107  Q
    |||||||||||||||||||||||||||||    
T  46798683 aaccactaggctacttgaccaaaaaataa 46798711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 55494787 - 55494815
Alignment:
Q  76 tccaaccactaggctacttgaccaaaaaa 104  Q
    |||||||||||||||||||||||||||||    
T  55494787 tccaaccactaggctacttgaccaaaaaa 55494815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 40921360 - 40921247
Alignment:
Q  138 acttgcctggataactattttgaagcatatgtttaataaaagttgttttcccagttgagtattgacccaaaagcagaaccataggtttggcatcaaaatc 237  Q
    ||||||||||||| |||  || ||||| |||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40921360 acttgcctggatagctacatttaagcagatgtttgataaatgttgttttaccagttgagtattgacccaaaagcataaccataggtttggcatcaaaatc 40921261  T
Q  238 actatctgtctgca 251  Q
    ||||| ||||||||    
T  40921260 actatttgtctgca 40921247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 8757325 - 8757255
Alignment:
Q  34 gaaccctagattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    ||||||| |||||||||| ||| ||||| ||| ||||| ||||| ||||||||||||||||||| ||||||    
T  8757325 gaaccctggattccccacgtctccacacataatgtgtgtgaatctaaccactaggctacttgacaaaaaaa 8757255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 41780525 - 41780586
Alignment:
Q  43 attccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    ||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||||| ||||||    
T  41780525 attcctcacttctacacacataatgtgtgtgaatctaaccactaggctacttgacaaaaaaa 41780586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 27731356 - 27731421
Alignment:
Q  42 gattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaataa 107  Q
    |||||||||||||| ||||||||| |||||  | || | ||||||| || ||||||||||||||||    
T  27731356 gattccccacttctccacacttaaggtgtgttagtctacccactagactgcttgaccaaaaaataa 27731421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 3766916 - 3766944
Alignment:
Q  79 aaccactaggctacttgaccaaaaaataa 107  Q
    |||||||||||||||||||||||||||||    
T  3766916 aaccactaggctacttgaccaaaaaataa 3766944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 39691523 - 39691591
Alignment:
Q  42 gattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaataataa 110  Q
    |||||||||||||| ||  ||||||||||| ||||||| ||||||||||||||||| | |||| |||||    
T  39691523 gattccccacttctccatgcttaaagtgtgtgaatccagccactaggctacttgactagaaaaaaataa 39691591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 1020158 - 1020203
Alignment:
Q  52 ttctacacacttaaagtgtgcgaatccaaccactaggctacttgac 97  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||    
T  1020158 ttctccacacttaaagtgtgtgaatctaaccactaggctacttgac 1020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 55564356 - 55564268
Alignment:
Q  161 agcatatgtttaataaaagttgttttcccagttgagtattgacccaaaagcagaaccataggtttggcatcaaaatcactatctgtctg 249  Q
    |||| |||||| ||||| ||||||||||| || || |||||||| | |||||  ||||| ||||| |||||||||||||| || |||||    
T  55564356 agcaaatgttttataaatgttgttttcccggtggaatattgaccaagaagcatgaccattggtttagcatcaaaatcactgtcggtctg 55564268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 50578615 - 50578686
Alignment:
Q  34 gaaccctagattccccacttctacacacttaaagtgtgcgaatccaa-ccactaggctacttgaccaaaaaa 104  Q
    |||||| ||| | |||||||||||||| ||||| |||| ||| || | ||||||||||||||||||||||||    
T  50578615 gaaccccagactacccacttctacacatttaaaatgtgtgaaccccagccactaggctacttgaccaaaaaa 50578686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 50264033 - 50263971
Alignment:
Q  42 gattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    |||||||||||||| ||||| | | ||||| ||||| | ||||||||||||||||| ||||||    
T  50264033 gattccccacttctccacacatgatgtgtgtgaatctagccactaggctacttgacaaaaaaa 50263971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 31068936 - 31068874
Alignment:
Q  42 gattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    |||||||||||||| ||||||||| ||||| ||||| ||||||||| ||| ||||| ||||||    
T  31068936 gattccccacttctccacacttaatgtgtgtgaatctaaccactagactatttgacaaaaaaa 31068874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 38581600 - 38581572
Alignment:
Q  79 aaccactaggctacttgaccaaaaaataa 107  Q
    |||||||||||||||||||||||||||||    
T  38581600 aaccactaggctacttgaccaaaaaataa 38581572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 45407376 - 45407348
Alignment:
Q  76 tccaaccactaggctacttgaccaaaaaa 104  Q
    |||||||||||||||||||||||||||||    
T  45407376 tccaaccactaggctacttgaccaaaaaa 45407348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 15837204 - 15837266
Alignment:
Q  42 gattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    ||||||||| || | ||||| ||| ||||| ||||||| ||||||||| ||||||||||||||    
T  15837204 gattccccatttttccacacataatgtgtgtgaatccagccactaggccacttgaccaaaaaa 15837266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 28300152 - 28300214
Alignment:
Q  42 gattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    |||||||||||||| || || ||| ||||| ||||| | |||| |||||||||||||||||||    
T  28300152 gattccccacttctccatacataatgtgtgtgaatctagccacaaggctacttgaccaaaaaa 28300214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 43085188 - 43085160
Alignment:
Q  79 aaccactaggctacttgaccaaaaaataa 107  Q
    |||||||||||||||||||||||||||||    
T  43085188 aaccactaggctacttgaccaaaaaataa 43085160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 5925646 - 5925708
Alignment:
Q  42 gattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    |||||||||||||| ||||| ||| ||||| ||||| | |||||||| |||||||| ||||||    
T  5925646 gattccccacttcttcacacataatgtgtgtgaatctagccactaggttacttgacaaaaaaa 5925708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 7215090 - 7215128
Alignment:
Q  73 gaatccaaccactaggctacttgaccaaaaaataataat 111  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  7215090 gaatccaaccactagactgcttgaccaaaaaataataat 7215128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 7326382 - 7326312
Alignment:
Q  34 gaaccctagattccccacttctacacacttaaagtgtgcgaatccaaccactaggctacttgaccaaaaaa 104  Q
    |||||||||||||||||||||| ||||| ||| ||||| ||||  | ||||||| |||||| || ||||||    
T  7326382 gaaccctagattccccacttctccacacataatgtgtgtgaatttagccactagactacttaacaaaaaaa 7326312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 857 - 797
Alignment:
Q  48 ccacttctacacacttaaagtgtgcgaa-tccaaccactaggctacttgaccaaaaaataa 107  Q
    |||||||| |||| ||||| |||||||  || | |||||||||||||||||||||||||||    
T  857 ccacttctccacaattaaattgtgcgagctctagccactaggctacttgaccaaaaaataa 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University