View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_22 (Length: 385)
Name: NF17318_low_22
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 99 - 368
Target Start/End: Original strand, 38633748 - 38634016
Alignment:
| Q |
99 |
gttcatgtttaaagttatgaatagaagttacaaaaaatggaaagagaaggtaaattgtgcaatcacaccatagacaaataaaccaacacaagaatttgca |
198 |
Q |
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| T |
38633748 |
gttcatgtttaaagttatgaatagaagttacaaaaaatggaaagagaaggtaaagtgtgcaatcacaccatagacaaataaaccaacacaagaatttgca |
38633847 |
T |
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| Q |
199 |
aatattaaaattccattcaatcatataactacaaaaagaatcaacctgtgaggcaggggtcatgattctctaagattgttccaaactttgtaacacactt |
298 |
Q |
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| T |
38633848 |
aatattaaaattccattcaatcatataactacaaaaagaatcaacctgtgaggca-gggtcatgattctctaagattgttccaaactttgtaacacactt |
38633946 |
T |
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| Q |
299 |
nnnnnnnncagcaaaatggatcatgataataatgatcactcctaaatgaaaccaggcataagtttcaaaa |
368 |
Q |
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| T |
38633947 |
aaaaaaaacagcaaaatggatcatgataataatgatcactcctaaatgaaaccaggcataagtttcaaaa |
38634016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 38633599 - 38633745
Alignment:
| Q |
13 |
aatatcaaggacagacaaaattatcgctgtttgcttgttgaaaaatttgataataaaatacagttagactataaaagtg-------nnnnnnngttcatg |
105 |
Q |
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| T |
38633599 |
aatatcaaggactgacaaaattatcgctgtttgcttgttgaaaaatttgataataaaatacagttagattataaaagtgttttttttttttttgttcatg |
38633698 |
T |
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| Q |
106 |
tttaaagttatgaatagaagttacaaaaaatggaaagagaaggtaaa |
152 |
Q |
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| T |
38633699 |
tttaaagttatgaatagaagttacaaaaaatggaaagagaaggtaaa |
38633745 |
T |
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