View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_23 (Length: 383)
Name: NF17318_low_23
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 27912976 - 27913160
Alignment:
| Q |
182 |
aagaagatggtgccgtcattggtggtgatgaccaccgtcattgttgaagaacatggcccgtcattgctatctctaaagcacaatcctcctctataaattc |
281 |
Q |
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| T |
27912976 |
aagaagatggcgccgtcattggtggtgatgaccaccgtcattgttgaagaacatggcccgtcattgctatctctaaagcacaatcctcctctataaattc |
27913075 |
T |
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| Q |
282 |
ttggaatgatgatgctttgatgcagagatacaaacgagtgttcttcatcttggcttaaactttttcatcacattaagaagcaaat |
366 |
Q |
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| T |
27913076 |
ttggaatgatgatgctttgatgcagagatacaaacgagtgttcttcatcttggcttaaactttttcatcacattaagaagcaaat |
27913160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 27909954 - 27910134
Alignment:
| Q |
6 |
agagaagaatctaacaactcggtggaaaattattttcgctgttaaatagaataacaaacccaaacaatgtacaaaaaatggcgcagacctnnnnnnnntt |
105 |
Q |
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| T |
27909954 |
agagaaaaatctaacaactcagtggaaaattattgtcgctgttaaatagactaacaaacccaaacaatgtacaaaaaatggcgcagacctaaaaaaaatt |
27910053 |
T |
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| Q |
106 |
gaaggaaactgaagctcttgatacacatgaaatcttccagaacgacttcgtgagttggacgatgtcgatcttgttgaagaa |
186 |
Q |
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| T |
27910054 |
gtaggaaactgaagctcttggtacacatgaaatcttccggaacgccttcgtgagttggacgatgtcgatcttgttgaagaa |
27910134 |
T |
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