View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_25 (Length: 373)
Name: NF17318_low_25
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 37318463 - 37318756
Alignment:
| Q |
22 |
ttggtgtatgtcggtgtctgaccctcggacacgcctgattggaggagtatttgtgcttcatagtttttcttcaagtcgatatcatccaatcagacagaca |
121 |
Q |
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| T |
37318463 |
ttggtgtatgtcggtgtctgaccctcggacacgcctgattggaggagtatttgtgcttcatagtttttcttcaagtcgatatcttccaatcagacagaca |
37318562 |
T |
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| Q |
122 |
gaca--------aacatcggtctttaatgtctttgaaacacttggtttgtgtttctctatgttcgttgtcgacatgttgtacctatgacatctaatacta |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37318563 |
gacagacagacaaacatcggtctttaatgtctttgaaacacttggtttgtgtttctctatgttcgtt------atgttgtacctatgacatctaatacta |
37318656 |
T |
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| Q |
214 |
attatggaggctcatctcaagtgctcttataatcaatgattgattgatcattgcttactttgaaagcttagatagtggattgaatggaggattgaagcac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37318657 |
attatggaggctcatctcaagtgctcttataatcaatgattgattgatcattgcttactttgaaagcttatatagtggattgaatggaggattgaagcac |
37318756 |
T |
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