View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_26 (Length: 370)
Name: NF17318_low_26
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 1884814 - 1885167
Alignment:
| Q |
1 |
tcaagtcttcaagctaaagaacaaaggatgataattgagagtcttataagcattattcctcctcagaaggatactgtttcgtgtactttccttcttaggc |
100 |
Q |
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| T |
1884814 |
tcaagtcttcaagctaaagaacaaaggatgataattgagagtcttataagcattattcctcctcagaaggatactgtttcgtgtactttccttcttaggc |
1884913 |
T |
|
| Q |
101 |
ttctgagaatggcaattatgttaaaggttgcacctgcattggttactgaattagagaaaagggttggaatgcaatttgagcaagctacacttgctgatct |
200 |
Q |
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| T |
1884914 |
ttctgagaatggcaattatgttaaaggttgcacctgcattggttactgaattagagaaaagggttggaatgcaatttgagcaagctacacttgctgatct |
1885013 |
T |
|
| Q |
201 |
attaattccttgttataataaaggagagacaatgatgtatgatgttgatcttgttatgaggctgcttgagcattttcttgtacaagaagtgactgaaaat |
300 |
Q |
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| T |
1885014 |
attaattccttgttataataaaggagagacaatgatgtatgatgttgatcttgttatgaggctgcttgagcattttcttgtacaagaagtgactgaaaat |
1885113 |
T |
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| Q |
301 |
tctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaac |
354 |
Q |
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| T |
1885114 |
tctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaac |
1885167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 288
Target Start/End: Complemental strand, 37214206 - 37214056
Alignment:
| Q |
135 |
tgcattggttactgaattagagaaaagggttggaatgcaatttgagcaagctacacttgctgatctattaattccttgttataataaaggagagacaatg |
234 |
Q |
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| T |
37214206 |
tgcattgattactgatttagagaaaagggttggaatgcagtttgagcaagctacactttctgatcttctaattccttgctatgagaaaagtga---aact |
37214110 |
T |
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| Q |
235 |
atgtatgatgttgatcttgttatgaggctgcttgagcattttcttgtacaagaa |
288 |
Q |
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| T |
37214109 |
atgtatgatgtggatcttgttcagaggttgttggagcattttcttgttcaagaa |
37214056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 37214434 - 37214307
Alignment:
| Q |
1 |
tcaagtcttcaagctaaagaacaaaggatgataattgagagtcttataagcattattcctcctcagaaggatactgtttcgtgtactttccttcttaggc |
100 |
Q |
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|||| ||||||| | || || |||| |||| | ||||||||||| || ||||| ||||| || ||||| || | ||| ||||||| |||||||| |||| |
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| T |
37214434 |
tcaactcttcaaaccaaggatcaaaagatggttattgagagtctcatcagcataattccaccacagaaagacagtgtctcgtgtagcttccttctcaggc |
37214335 |
T |
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| Q |
101 |
ttctgagaatggcaattatgttaaaggt |
128 |
Q |
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| T |
37214334 |
ttctgagaatggcaaacatgttaaaggt |
37214307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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