View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_low_27 (Length: 367)

Name: NF17318_low_27
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_low_27
NF17318_low_27
[»] chr7 (6 HSPs)
chr7 (116-350)||(22295262-22295498)
chr7 (11-65)||(24495068-24495122)
chr7 (12-65)||(44113474-44113527)
chr7 (27-60)||(26407436-26407469)
chr7 (24-67)||(43111472-43111515)
chr7 (24-65)||(24494030-24494071)
[»] chr8 (12 HSPs)
chr8 (10-67)||(13513463-13513520)
chr8 (10-67)||(13514881-13514938)
chr8 (10-67)||(13602996-13603053)
chr8 (10-67)||(13604414-13604471)
chr8 (10-67)||(21670107-21670164)
chr8 (10-65)||(44103312-44103367)
chr8 (10-60)||(39323837-39323887)
chr8 (10-55)||(44102004-44102049)
chr8 (10-66)||(39325850-39325906)
chr8 (10-56)||(21961877-21961923)
chr8 (10-55)||(15116873-15116918)
chr8 (22-66)||(13360397-13360441)
[»] chr2 (7 HSPs)
chr2 (11-65)||(26205058-26205112)
chr2 (10-67)||(4512149-4512206)
chr2 (13-60)||(37982741-37982788)
chr2 (13-66)||(14714536-14714589)
chr2 (22-60)||(4513781-4513819)
chr2 (96-124)||(12958403-12958431)
chr2 (27-67)||(41296487-41296527)
[»] chr4 (8 HSPs)
chr4 (8-67)||(2292193-2292252)
chr4 (10-67)||(36604857-36604914)
chr4 (20-67)||(2293551-2293598)
chr4 (24-67)||(18358403-18358446)
chr4 (24-67)||(36604483-36604526)
chr4 (14-52)||(44160431-44160469)
chr4 (24-65)||(38371835-38371876)
chr4 (16-48)||(52980102-52980134)
[»] chr5 (6 HSPs)
chr5 (14-67)||(12829613-12829666)
chr5 (14-67)||(12861592-12861645)
chr5 (22-65)||(2166156-2166199)
chr5 (12-67)||(41906416-41906471)
chr5 (30-67)||(14210186-14210223)
chr5 (14-62)||(22818208-22818256)
[»] chr3 (4 HSPs)
chr3 (10-67)||(7483541-7483598)
chr3 (24-58)||(7483161-7483195)
chr3 (10-55)||(31638173-31638218)
chr3 (22-66)||(34901696-34901740)
[»] chr1 (5 HSPs)
chr1 (15-67)||(51218987-51219039)
chr1 (8-67)||(51217661-51217720)
chr1 (10-63)||(34654356-34654409)
chr1 (27-67)||(9415667-9415707)
chr1 (27-60)||(27690662-27690695)
[»] scaffold0015 (1 HSPs)
scaffold0015 (10-56)||(207814-207860)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 116 - 350
Target Start/End: Complemental strand, 22295498 - 22295262
Alignment:
Q  116 ttattattaagcttttgatttgactaaaagcacgttgtttgaatcaaatatagaggtatggttgagttaaatataa-taattagaagattgttgtgttaa 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  22295498 ttattattaagcttttgatttgactaaaagcatgttgtttgaatcaaatatagaggtatggctgagttaaatataactaattagaagattgttgtgttaa 22295399  T
Q  215 actgatttcagaagtttgattttcttt--cttgaataagtaatcaaaagttgttcatttccctccaagaactattgatttgaaagaaatagatcttctaa 312  Q
    |||||||  |||||||||||||| |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22295398 actgattg-agaagtttgattttttttttcttgaataagcaatcaaaagttgttcatttccctccaagaactattgatttgaaagaaatagatattctaa 22295300  T
Q  313 atcaaagcccaaaatataaagccagagaattttcgttg 350  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  22295299 atcaaagcccaaaatatatagccagagaaatttcgttg 22295262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 24495068 - 24495122
Alignment:
Q  11 gaggtaacagaagaagacataagagaccaatttgagacgttttttagttaaggga 65  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  24495068 gaggtaacagaagaagacataagggaccaatttgagaggttttttagttaaggga 24495122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 44113527 - 44113474
Alignment:
Q  12 aggtaacagaagaagacataagagaccaatttgagacgttttttagttaaggga 65  Q
    ||||||| | |||| ||||||| |||||||||||||||||||||||||||||||    
T  44113527 aggtaacggcagaatacataagggaccaatttgagacgttttttagttaaggga 44113474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 26407436 - 26407469
Alignment:
Q  27 acataagagaccaatttgagacgttttttagtta 60  Q
    ||||||||||||||||||||||||||||||||||    
T  26407436 acataagagaccaatttgagacgttttttagtta 26407469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 43111515 - 43111472
Alignment:
Q  24 aagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||| || ||||||||||||||||||||||| ||||||    
T  43111515 aagacataagtgatcaatttgagacgttttttagttaggggacc 43111472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 24494071 - 24494030
Alignment:
Q  24 aagacataagagaccaatttgagacgttttttagttaaggga 65  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  24494071 aagacataagggaccaatttgagacattttttagttagggga 24494030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 13513520 - 13513463
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13513520 agaggtaacagaagaagacataagggaccaatttgagacgttttttagttaggggacc 13513463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 13514881 - 13514938
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13514881 agaggtaacagaagaagacataagggaccaatttgagacgttttttagttaggggacc 13514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 13603053 - 13602996
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13603053 agaggtaacagaagaagacataagggaccaatttgagacgttttttagttaggggacc 13602996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 13604414 - 13604471
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13604414 agaggtaacagaagaagacataagggaccaatttgagacgttttttagttaggggacc 13604471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 21670164 - 21670107
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  21670164 agaggtaacggaagaagacataagggaccaatttgagacgttttttagttaggggacc 21670107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 44103312 - 44103367
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaaggga 65  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  44103312 agaggaaacggaagaagacataagagaccaatttgagacgttttttagttagggga 44103367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 39323887 - 39323837
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagtta 60  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  39323887 agaggtaacggaagaagacataagagatcaatttgagacgttttttagtta 39323837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 44102049 - 44102004
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgtttttt 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  44102049 agaggtaacggaagaagacataagagaccaatttgagacgtttttt 44102004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 39325850 - 39325906
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggac 66  Q
    ||||||||| |||||| ||||||| ||||||||| | |||||||||||||| |||||    
T  39325850 agaggtaacggaagaaaacataagggaccaatttaaaacgttttttagttaggggac 39325906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 21961923 - 21961877
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgtttttta 56  Q
    |||| |||| |||||||||||||| || |||||||||||||||||||    
T  21961923 agagataacggaagaagacataagggatcaatttgagacgtttttta 21961877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 15116873 - 15116918
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgtttttt 55  Q
    ||||||||| |||||| || |||||||| |||||||||||||||||    
T  15116873 agaggtaacggaagaaaacgtaagagactaatttgagacgtttttt 15116918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 13360441 - 13360397
Alignment:
Q  22 agaagacataagagaccaatttgagacgttttttagttaagggac 66  Q
    |||| ||||||| |||||||||||||||||||||| ||| |||||    
T  13360441 agaatacataagggaccaatttgagacgttttttaattaggggac 13360397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 26205112 - 26205058
Alignment:
Q  11 gaggtaacagaagaagacataagagaccaatttgagacgttttttagttaaggga 65  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  26205112 gaggtaacggaagaagacataagggaccaatttgagacgttttttagttaaggga 26205058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 4512206 - 4512149
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  4512206 agaggtaacggaagaagacacaagggaccaatttgagacgttttttagttatgggacc 4512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 37982788 - 37982741
Alignment:
Q  13 ggtaacagaagaagacataagagaccaatttgagacgttttttagtta 60  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  37982788 ggtaacggaagaagacataagggaccaatttgagacgttttttagtta 37982741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 14714589 - 14714536
Alignment:
Q  13 ggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggac 66  Q
    |||||| ||||||||||||||  |||||||||| |||||||| |||||||||||    
T  14714589 ggtaacggaagaagacataagcaaccaatttgaaacgtttttaagttaagggac 14714536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 4513781 - 4513819
Alignment:
Q  22 agaagacataagagaccaatttgagacgttttttagtta 60  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  4513781 agaagacataaaagaccaatttaagacgttttttagtta 4513819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 12958431 - 12958403
Alignment:
Q  96 accaaatgatatattaagccttattatta 124  Q
    |||||||||||||||||||||||||||||    
T  12958431 accaaatgatatattaagccttattatta 12958403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 41296487 - 41296527
Alignment:
Q  27 acataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||| |||||| |||| |||||||||||||||||||||    
T  41296487 acataagggaccaaattgaaacgttttttagttaagggacc 41296527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 2292252 - 2292193
Alignment:
Q  8 agagaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  2292252 agagaggtaacggaagaagacataagggaccaatttgaggcgttttttagttaggggacc 2292193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 36604857 - 36604914
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  36604857 agaggtaacggaagaagacataagggaccaatttaagacgttttttagttaggggacc 36604914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 2293551 - 2293598
Alignment:
Q  20 gaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  2293551 gaagaagacataagggaccaatttaagacgttttttagttaggggacc 2293598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 18358403 - 18358446
Alignment:
Q  24 aagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||    
T  18358403 aagacataagggaccaatttaagacgttttttagttaggggacc 18358446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 36604526 - 36604483
Alignment:
Q  24 aagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||    
T  36604526 aagacataagggaccaatttaagacgttttttagttaggggacc 36604483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 44160431 - 44160469
Alignment:
Q  14 gtaacagaagaagacataagagaccaatttgagacgttt 52  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  44160431 gtaacagaagaatacataagggaccaatttgagacgttt 44160469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 38371835 - 38371876
Alignment:
Q  24 aagacataagagaccaatttgagacgttttttagttaaggga 65  Q
    |||||||||| || ||||||||||||||||||||||| ||||    
T  38371835 aagacataagggatcaatttgagacgttttttagttagggga 38371876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 52980134 - 52980102
Alignment:
Q  16 aacagaagaagacataagagaccaatttgagac 48  Q
    ||||| |||||||||||||||||||||||||||    
T  52980134 aacagcagaagacataagagaccaatttgagac 52980102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 12829666 - 12829613
Alignment:
Q  14 gtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  12829666 gtaacagaagaatacataagggaccaatttgagacgtttcttagttaagggacc 12829613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 12861645 - 12861592
Alignment:
Q  14 gtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  12861645 gtaacagaagaatacataagggaccaatttgagacgtttcttagttaagggacc 12861592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 2166199 - 2166156
Alignment:
Q  22 agaagacataagagaccaatttgagacgttttttagttaaggga 65  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||    
T  2166199 agaatacataagggaccagtttgagacgttttttagttaaggga 2166156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 41906416 - 41906471
Alignment:
Q  12 aggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||| | |||| | ||||| | |||||||||||||||||||||||||||||||    
T  41906416 aggtaacggcagaatatataaggggccaatttgagacgttttttagttaagggacc 41906471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 14210223 - 14210186
Alignment:
Q  30 taagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  14210223 taagggaccaatttgagacgttttttagttatgggacc 14210186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 22818256 - 22818208
Alignment:
Q  14 gtaacagaagaagacataagagaccaatttgagacgttttttagttaag 62  Q
    |||||||||||| ||||| ||||| ||||| |||||||| |||||||||    
T  22818256 gtaacagaagaatacatatgagactaatttaagacgtttcttagttaag 22818208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 7483541 - 7483598
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  7483541 agaggtaacggaagaagacataagggaccaatttaagacgttttttagttaggggacc 7483598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 7483195 - 7483161
Alignment:
Q  24 aagacataagagaccaatttgagacgttttttagt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  7483195 aagacataagagaccaatttgagacgttttttagt 7483161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 31638218 - 31638173
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgtttttt 55  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||    
T  31638218 agaggtaacataagaagacataaggaaccaatttgagacgtttttt 31638173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 34901740 - 34901696
Alignment:
Q  22 agaagacataagagaccaatttgagacgttttttagttaagggac 66  Q
    |||| ||||||| ||||||||| |||||||||||| |||||||||    
T  34901740 agaatacataagggaccaatttaagacgttttttaattaagggac 34901696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 51218987 - 51219039
Alignment:
Q  15 taacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  51218987 taacggaagaagacataagggaccaatttgagacgttttttagttaggggacc 51219039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 51217720 - 51217661
Alignment:
Q  8 agagaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||||||| |||||||||||||| |||||||||||| | ||||||| ||| ||||||    
T  51217720 agagaggtaacggaagaagacataagggaccaatttgaggcattttttaattaggggacc 51217661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 34654356 - 34654409
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgttttttagttaagg 63  Q
    ||||||||| | ||||||||||||||||||| |||| ||||||| |||||||||    
T  34654356 agaggtaacggtagaagacataagagaccaaattgaaacgttttatagttaagg 34654409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 9415707 - 9415667
Alignment:
Q  27 acataagagaccaatttgagacgttttttagttaagggacc 67  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  9415707 acataagggaccaatttaagacgttttttagttaagggacc 9415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 27690662 - 27690695
Alignment:
Q  27 acataagagaccaatttgagacgttttttagtta 60  Q
    |||||||| |||||||||||||||||||||||||    
T  27690662 acataagaaaccaatttgagacgttttttagtta 27690695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 207814 - 207860
Alignment:
Q  10 agaggtaacagaagaagacataagagaccaatttgagacgtttttta 56  Q
    |||| |||| |||||||||||||| || |||||||||||||||||||    
T  207814 agagataacggaagaagacataagggatcaatttgagacgtttttta 207860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University