View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_low_29 (Length: 360)

Name: NF17318_low_29
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_low_29
NF17318_low_29
[»] chr4 (14 HSPs)
chr4 (30-238)||(6769218-6769426)
chr4 (36-354)||(6626886-6627204)
chr4 (31-164)||(6550689-6550822)
chr4 (40-171)||(6502558-6502689)
chr4 (36-191)||(6792063-6792218)
chr4 (41-163)||(6503817-6503939)
chr4 (36-165)||(6593426-6593555)
chr4 (32-165)||(6811514-6811647)
chr4 (40-166)||(6832043-6832169)
chr4 (36-177)||(6646742-6646883)
chr4 (41-130)||(6738198-6738287)
chr4 (44-167)||(6522871-6522994)
chr4 (41-166)||(6748552-6748677)
chr4 (41-114)||(6541774-6541847)
[»] scaffold0729 (1 HSPs)
scaffold0729 (36-191)||(6411-6566)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 6769218 - 6769426
Alignment:
Q  30 gttctagtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769218 gttctagtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgc 6769317  T
Q  130 ccaatccatttttaatcaaattagtccctattttgagtacaattacttcctcaataacatcgaaacagtttgggaacgaaatggaggtcaagtttcttta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6769318 ccaatccatttttaatcaaattagtccctattttgagtacaattacttcctcaataacatcggaacagtttgggaacgaaatggaggtcaagtttcttta 6769417  T
Q  230 caaaagaaa 238  Q
    ||| |||||    
T  6769418 caagagaaa 6769426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 36 - 354
Target Start/End: Complemental strand, 6627204 - 6626886
Alignment:
Q  36 gtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatc 135  Q
    |||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||| |||||||||  ||||||||||||| | |||||||||||| |    
T  6627204 gtgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcccaagc 6627105  T
Q  136 catttttaatcaaattagtccctattttgagtacaattacttcctcaataacatcgaaacagtttgggaacgaaatggaggtcaagtttctttacaaaag 235  Q
     |||| | ||||| || |||||||||||||  ||||    || || || ||| ||   ||| ||||| ||| ||||||||||||||||||||||||||||    
T  6627104 tatttatgatcaagttggtccctattttgaacacaagagtttgctaaaaaacgtcaggacattttggcaacaaaatggaggtcaagtttctttacaaaag 6627005  T
Q  236 aaacttcgtatggctgtcaacaaaacaactgnnnnnnngatacttcatattgaatcagggaaagtgattttaaaagaaagactccgtcataaaagtgtac 335  Q
    ||||||| |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6627004 aaacttcttatggctgtcaacaaaacaactgaaaaaaagatacttcatattgaatcagggaaagtgattttaaaagaaagactccgtcataaaagtgtac 6626905  T
Q  336 ctcttatacttgatgatgt 354  Q
     |||||||||||| |||||    
T  6626904 ttcttatacttgacgatgt 6626886  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 6550822 - 6550689
Alignment:
Q  31 ttctagtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcc 130  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| | || || ||||||||||||||| |||||||||||||||| |||||||||    
T  6550822 ttctcgtgtgcaagatgtgattcaactattgaaacaatcaaaatctcctctacttatagggatttgggggatggcagggattggtaaaacaaccattgcc 6550723  T
Q  131 caatccatttttaatcaaattagtccctattttg 164  Q
    ||| |||||| | |||||||| ||||||||||||    
T  6550722 caagccatttatcatcaaattggtccctattttg 6550689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 6502689 - 6502558
Alignment:
Q  40 gcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatccatt 139  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||  | ||||| ||||||||| |||||||| ||||| | |||||||||||| |||||    
T  6502689 gcaagatgtgattcaactattgaaacaatcaagatctcctctcctgctagggatgtgggggatgtcagggattagtaaatcaaccattgcccaagccatt 6502590  T
Q  140 tttaatcaaattagtccctattttgagtacaa 171  Q
    |||||||| ||| |||||||||||||| ||||    
T  6502589 tttaatcagattggtccctattttgagcacaa 6502558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 6792063 - 6792218
Alignment:
Q  36 gtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatc 135  Q
    |||||||||||||||||||| ||||||||| |||||||  |||| ||||| | ||||| |||||||||||||||||||||||| | ||||||||| || |    
T  6792063 gtgtgcaagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccattgccaaagc 6792162  T
Q  136 catttttaatcaaattagtccctattttgagtacaattacttcctcaataacatcg 191  Q
    ||||| | |||||||| |||  ||||||||| |||| | ||||||| | |||||||    
T  6792163 catttatgatcaaattggtctttattttgagcacaagtgcttcctcgaaaacatcg 6792218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 6503939 - 6503817
Alignment:
Q  41 caagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatccattt 140  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||  | ||||| |||||||||||||||||||||||| | ||||||||| || ||||||    
T  6503939 caagatgtgattcaactattgaaacaatcaaaatctcctctcctgctggggatatgggggatgacagggattggtaaatcaaccattgccgaagccattt 6503840  T
Q  141 ttaatcaaattagtccctatttt 163  Q
     |||||| ||| |||||| ||||    
T  6503839 ataatcagattggtccctttttt 6503817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 6593555 - 6593426
Alignment:
Q  36 gtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatc 135  Q
    |||||||||| ||||||||| |||||||||||||||||  |||| || |||| ||||| |||||||||||||||||||||||| | |||||||||||| |    
T  6593555 gtgtgcaagacgtgattcaactattgaaacaatcaaaaagtcctctcataatagggatatgggggatgacagggattggtaaatcaaccattgcccaagc 6593456  T
Q  136 catttttaatcaaattagtccctattttga 165  Q
    |||||   |||||||| |||  ||||||||    
T  6593455 catttacgatcaaattggtctttattttga 6593426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 6811514 - 6811647
Alignment:
Q  32 tctagtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgccc 131  Q
    |||||| |||||||||||||||||  ||||||||||||||||| |||| ||||| | ||||| |||||||||||||||||||||||| |  ||||||||     
T  6811514 tctagtttgcaagatgtgattcaacaattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcagccattgccg 6811613  T
Q  132 aatccatttttaatcaaattagtccctattttga 165  Q
    |  |||||| | |||| |||||||| ||||||||    
T  6811614 aggccatttatgatcagattagtccttattttga 6811647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 6832043 - 6832169
Alignment:
Q  40 gcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatccatt 139  Q
    |||||||||||||||| |||||||||| |||||||||||| || || | ||||| ||||||||| |||||||||||||| | | ||||| |||  ||||     
T  6832043 gcaagatgtgattcaactattgaaacagtcaaaatctcctctcatactagggatatgggggatgccagggattggtaaatcaagcattgtccatgccata 6832142  T
Q  140 tttaatcaaattagtccctattttgag 166  Q
    | |||||||||| ||||||||||||||    
T  6832143 tgtaatcaaattggtccctattttgag 6832169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 6646742 - 6646883
Alignment:
Q  36 gtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatc 135  Q
    |||||||||||||||||||  | ||||||||||||| |  |||| ||||||| ||||| ||||||||| ||||||| |||||| | ||||||||| || |    
T  6646742 gtgtgcaagatgtgattcacctgttgaaacaatcaagaagtcctctcctaatagggatatgggggatggcagggatcggtaaatcaaccattgccgaagc 6646841  T
Q  136 catttttaatcaaattagtccctattttgagtacaattactt 177  Q
    ||||| |||||| ||| |||| ||||||||| |||| |||||    
T  6646842 catttataatcagattggtccttattttgagcacaagtactt 6646883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 6738198 - 6738287
Alignment:
Q  41 caagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcc 130  Q
    ||||||||||||||| |||||||||||||||||||| || ||||  | ||||| |||||||||||||||||||||||| | |||||||||    
T  6738198 caagatgtgattcaactattgaaacaatcaaaatcttctctcctgctagggatatgggggatgacagggattggtaaatcaaccattgcc 6738287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 6522994 - 6522871
Alignment:
Q  44 gatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatccattttta 143  Q
    |||||||||||| ||||||||||||||||||||||| || |||| || || |||||||||  ||||||||||||| | ||||||||| |  |||||| |     
T  6522994 gatgtgattcaactattgaaacaatcaaaatctcctctcgtaataggcatatgggggatggtagggattggtaaatcaaccattgccaaggccatttatg 6522895  T
Q  144 atcaaattagtccctattttgagt 167  Q
    ||||| || |||| ||||||||||    
T  6522894 atcaagttggtccttattttgagt 6522871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 6748552 - 6748677
Alignment:
Q  41 caagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatccattt 140  Q
    ||||||||||||||| |||| |||||||| ||||| ||| ||||| | ||||| ||||||||| ||||| |||||||| |  | |||||  || ||||||    
T  6748552 caagatgtgattcaactattaaaacaatcgaaatcccctctcctactcgggatatgggggatggcaggggttggtaaatcagctattgctaaagccattt 6748651  T
Q  141 ttaatcaaattagtccctattttgag 166  Q
     | |||||||| ||||||||||||||    
T  6748652 atgatcaaattggtccctattttgag 6748677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 6541847 - 6541774
Alignment:
Q  41 caagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattgg 114  Q
    ||||||||||||||| |||||||||||||||||| |||| |  || | ||||| ||||||||||||||||||||    
T  6541847 caagatgtgattcaactattgaaacaatcaaaatgtcctcttttagtagggatatgggggatgacagggattgg 6541774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 6566 - 6411
Alignment:
Q  36 gtgtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatc 135  Q
    |||||||||||||||||||| ||||||||| |||||||  |||| ||||| | ||||| |||||||||||||||||||||||| | ||||||||| || |    
T  6566 gtgtgcaagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccattgccaaagc 6467  T
Q  136 catttttaatcaaattagtccctattttgagtacaattacttcctcaataacatcg 191  Q
    ||||| | |||||||| |||  ||||||||| |||| | ||||||| | |||||||    
T  6466 catttatgatcaaattggtctttattttgagcacaagtgcttcctcgaaaacatcg 6411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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