View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_low_36 (Length: 314)

Name: NF17318_low_36
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_low_36
NF17318_low_36
[»] chr2 (10 HSPs)
chr2 (20-149)||(35019588-35019713)
chr2 (191-302)||(35019435-35019546)
chr2 (20-149)||(35029078-35029201)
chr2 (229-302)||(35033152-35033225)
chr2 (245-306)||(35008895-35008956)
chr2 (245-306)||(35036977-35037038)
chr2 (242-302)||(35026156-35026216)
chr2 (243-295)||(34998928-34998980)
chr2 (240-302)||(36288442-36288504)
chr2 (229-299)||(35012412-35012482)
[»] chr4 (2 HSPs)
chr4 (241-305)||(30595269-30595333)
chr4 (241-305)||(30612617-30612681)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 35019713 - 35019588
Alignment:
Q  20 aaaccaactaggttgcacaatattttgtagtattctctgtctttctcatacatagggatatatgcatcaggtccacatttttcatgatacaccaaatctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35019713 aaaccaactaggttgcacaatattttgtagtattctctgtctttctcata----gggatatatgcatcaggtccacatttttcatgatacaccaaatctt 35019618  T
Q  120 aaaaatgaaagaacgtaattaactctcact 149  Q
    ||||||||||||||||||||||||||||||    
T  35019617 aaaaatgaaagaacgtaattaactctcact 35019588  T

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Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 35019546 - 35019435
Alignment:
Q  191 ttgtagcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac 290  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35019546 ttgtggcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac 35019447  T
Q  291 tccatatcttca 302  Q
    ||||||||||||    
T  35019446 tccatatcttca 35019435  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 35029201 - 35029078
Alignment:
Q  20 aaaccaactaggttgcacaatattttgtagtattctctgtctttctcatacatagggatatatgcatcaggtccacatttttcatgatacaccaaatctt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||  ||||||||||||||||||| |||||||||||||||||    
T  35029201 aaaccaactaggttgcacaatattttgcagtattctctgtctttctcata----gggatat--gcatcaggtccacatttttaatgatacaccaaatctt 35029108  T
Q  120 aaaaatgaaagaacgtaattaactctcact 149  Q
    |||||||||| ||| |||||||||||||||    
T  35029107 aaaaatgaaataacttaattaactctcact 35029078  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 35033152 - 35033225
Alignment:
Q  229 atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 302  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35033152 atggatgctcctcctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 35033225  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 35008895 - 35008956
Alignment:
Q  245 ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatctc 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35008895 ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc 35008956  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 35037038 - 35036977
Alignment:
Q  245 ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatctc 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35037038 ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc 35036977  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 35026156 - 35026216
Alignment:
Q  242 ctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  35026156 ctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttca 35026216  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 34998980 - 34998928
Alignment:
Q  243 tcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34998980 tcctttgcacatagcaatgtttccatggtttgctatgggacactcaactccat 34998928  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 36288442 - 36288504
Alignment:
Q  240 ttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 302  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  36288442 ttcttctttgcacatagcaatgtctccatggtttgcaatgggacacctaattccatatcttca 36288504  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 35012482 - 35012412
Alignment:
Q  229 atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatct 299  Q
    |||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| || || ||||||||    
T  35012482 atggatgctcttcctcctatgcatatatcaatgtttccatggtttgctatgggacatttcaccccatatct 35012412  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 30595333 - 30595269
Alignment:
Q  241 tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatct 305  Q
    |||||||| ||||||||||||| |||||||||||| ||||| |||  ||||||||  ||||||||    
T  30595333 tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct 30595269  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 30612681 - 30612617
Alignment:
Q  241 tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatct 305  Q
    |||||||| ||||||||||||| |||||||||||| ||||| |||  ||||||||  ||||||||    
T  30612681 tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct 30612617  T

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