View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_38 (Length: 297)
Name: NF17318_low_38
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 3491610 - 3491338
Alignment:
| Q |
15 |
aataaatgttcggaatcacattgagtttgagaaaatcacaacgacgcattgtgatttggtcaaactcttctacgatccaaacatacactaaacgaaataa |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3491610 |
aataaatgttcggaatcacattgagtttgacaaaatcacaacgacgcattgtgatttggtcaaactcttctacgatccaaacatacactaaatgaaataa |
3491511 |
T |
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| Q |
115 |
ctagaaaatgtctaccgatacatcaattgagagcattttctcaagnnnnnnnctcgttgagagaaattaaagtttcaaatgcaccaaccaaagctttcac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3491510 |
ctagaaaatgtctaccgatacatcaattgagagcattttctcaagtttttttctcgttgagagaaattaaagtttcaaatgcaccaaccaaagctttcac |
3491411 |
T |
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| Q |
215 |
cttacccttctgaggttcaaccagttttctagctgtttcctcgatcacattattcaacaatacttgttcatct |
287 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3491410 |
cttacccttctgaggttcaaccagtttactagctgtttcctcgatcacattattcaacaatacttgttcatct |
3491338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 174 - 287
Target Start/End: Complemental strand, 4346600 - 4346487
Alignment:
| Q |
174 |
agagaaattaaagtttcaaatgcaccaaccaaagctttcaccttacccttctgaggttcaaccagttttctagctgtttcctcgatcacattattcaaca |
273 |
Q |
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|||||||| | ||||||||||||||||||||| ||||| ||||| | |||| || |||||| ||||| || ||||||||||| |||||||||||||||| |
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| T |
4346600 |
agagaaataacagtttcaaatgcaccaaccaatgctttaaccttgctcttcctagcttcaacaagtttacttgctgtttcctcaatcacattattcaaca |
4346501 |
T |
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| Q |
274 |
atacttgttcatct |
287 |
Q |
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|| ||||| ||||| |
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| T |
4346500 |
atccttgtgcatct |
4346487 |
T |
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