View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_40 (Length: 293)
Name: NF17318_low_40
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 43048782 - 43049043
Alignment:
| Q |
18 |
atggtctaacacccggacttgaggg-agtttatggttgagagtatattgcttgactgagtttattagctaaatatgattgttaatgttctttttatagta |
116 |
Q |
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| T |
43048782 |
atggtctaacacccggacttgaggggagtttatggttgagagtatattgcttgactgagtttattagctaaatattattgctaatggtctttttttagta |
43048881 |
T |
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| Q |
117 |
gataacgagtcnnnnnnnnnnnnnn-ggtgaatggtcttgtttgttagaaactattaggattaatggtatgaattaaattaataacaaaataaaaatcca |
215 |
Q |
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| T |
43048882 |
tataacgagtctttttttttttttttggtgaatggtcttgtttgttagaaactattaggattaatggtatgaattaaattaataacaaaataaaaatcca |
43048981 |
T |
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| Q |
216 |
gagaactaaagaaaataattatttatcgcatataaaggtatgatcgtaatgtacaaccaaag |
277 |
Q |
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| T |
43048982 |
gagaactaatgaaaataattatttatcgcatataaaggtatgatcgttatgtacaaccaaag |
43049043 |
T |
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