View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_42 (Length: 287)
Name: NF17318_low_42
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 49905584 - 49905399
Alignment:
| Q |
1 |
cactcttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaaatatctggagcttt |
100 |
Q |
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| T |
49905584 |
cactcttcttcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaaatatctggagcttt |
49905485 |
T |
|
| Q |
101 |
caagagcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcacctcattgaatttgtccctagaccgtagcataaagc |
186 |
Q |
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| T |
49905484 |
caagagcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcaccgcattgaatttgtccctagaccgtagcataaagc |
49905399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 49562518 - 49562778
Alignment:
| Q |
5 |
cttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaaatatctggagctttcaag |
104 |
Q |
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| T |
49562518 |
cttcttcatcaaacctttggaaagaagataccggataactgaagcccttggactaagccttttctctatactaagtccgaaaagctctggtgctgccagg |
49562617 |
T |
|
| Q |
105 |
agcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcacctcattgaatttgtccctagaccgtagcataaagctaggctttcttttaaatg |
204 |
Q |
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| T |
49562618 |
agcaataaaggatcccaaccaagttgttggatccaaaaacgcatcaccgcattgagtttgtccaaagaccgtagcataaggttaggccctcttttaaatg |
49562717 |
T |
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| Q |
205 |
cattaaaaattgcatcttcagaacaaccccaactcttgaaggcatcaacttttgcatccca |
265 |
Q |
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| T |
49562718 |
cagttaaaattgcatcttcagaataaccccagctcttcaaggcatcgactttggaatccca |
49562778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 49558356 - 49558615
Alignment:
| Q |
5 |
cttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaaatatctggagctttcaag |
104 |
Q |
| |
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|||| ||||||||||||| || ||||||||| |||||| | |||||||||||||||||||||||||| |||| | || |||| |||| | | ||| |
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| T |
49558356 |
cttcttcatcaaacctttggatagaagatacttgataactgaagcccttggaataagccttttctctatactatacccaaaaattgctggttcagttaag |
49558455 |
T |
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| Q |
105 |
agcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcacctcattgaatttgtccctagaccgtagcataaagctaggctttcttt-taaat |
203 |
Q |
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| T |
49558456 |
agcagcaaaggatcccacccaagctcatcgacccaaaatctcatcac-tgattgagtttgtctggagaccgtaacataaagttggg-ttgcttcctaaat |
49558553 |
T |
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| Q |
204 |
gcattaaaaattgcatcttcagaacaaccccaactcttgaaggcatcaacttttgcatccca |
265 |
Q |
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| T |
49558554 |
gcattaaaaatatcatcttcagaacaaccccaactcttcaagacatcaaatttagcatccca |
49558615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 49904718 - 49904652
Alignment:
| Q |
199 |
taaatgcattaaaaattgcatcttcagaacaaccccaactcttgaaggcatcaacttttgcatccca |
265 |
Q |
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| T |
49904718 |
taaatgcattaaaaactgcatcttcagaacaaccccaactcttcaagacatcaactttggcatccca |
49904652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 49571366 - 49571432
Alignment:
| Q |
5 |
cttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctct |
71 |
Q |
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|||| ||||||||||||| || ||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
49571366 |
cttcttcatcaaacctttggaaagaagatactggataacagaagcccttggactaagccttttctct |
49571432 |
T |
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