View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_50 (Length: 257)
Name: NF17318_low_50
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 24647582 - 24647357
Alignment:
| Q |
13 |
aaaatacttactttaaaaagtaaagccgtttaatttattnnnnnnnttaacgagtcaaacggtgcataatttaaatctaataaacataaatgctgttgaa |
112 |
Q |
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| T |
24647582 |
aaaatacttactttaaaaagtaaagc-gtttaatttattaaaaaaattaacgagtcaaacggtgaataatttaaatctaataaacataaatgctgtt-aa |
24647485 |
T |
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| Q |
113 |
aaaatgaaacatagcaaatgaaacatatcttttttccagtggatcaaaacaagtgtattcttaactttcgttattttttcaactt-taagaaaaagttgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |||||||||| |
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| T |
24647484 |
aaaatgaaacatagcaaatgaaacatatcttttttccagtggatcaaaacaa--gtattcttaactttcgttattgtttcaacttaaaaaaaaaagttgg |
24647387 |
T |
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| Q |
212 |
tgttttgacttaatgtattaagttcaaaaa |
241 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
24647386 |
tgttttgaattaatgtattaagttcaaaaa |
24647357 |
T |
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