View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17318_low_56 (Length: 245)
Name: NF17318_low_56
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_56 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 30935282 - 30935454
Alignment:
| Q |
17 |
aatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccaattcaa |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
30935282 |
aatatatagtggcagagcctttcttttcaagaatgtgagcttcatcaaaataatttgtggctttcctaagtagctcataggggaagatttgccacttcaa |
30935381 |
T |
|
| Q |
117 |
tttattctgctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccattgcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30935382 |
tttattctgctttggaaatatgtcagaagtgctagtgaagcagcagcacatacagagatcccaccccattgcc |
30935454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 30994191 - 30994360
Alignment:
| Q |
17 |
aatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccaattcaa |
116 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30994191 |
aatatacagtgggcgagcctttcttatcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcatatgggaagatttgccaattcaa |
30994290 |
T |
|
| Q |
117 |
tttattctgctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
186 |
Q |
| |
|
|||| |||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
30994291 |
tttactctgctttggaaatgtttcagatgtgctagtgaagcagcaacacatacagatatcccacctcatt |
30994360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 30965444 - 30965507
Alignment:
| Q |
17 |
aatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttt |
80 |
Q |
| |
|
|||||| |||||| |||| | ||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
30965444 |
aatatacagtggccgagcctctcttttcaagaatgtgagcttgatcaaaataatatgtggcttt |
30965507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 30965503 - 30965564
Alignment:
| Q |
125 |
gctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
186 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||| ||||||| |||| |||| |
|
|
| T |
30965503 |
gctttggaaatgtttcagaagtgctagtgaagcagcagcacatagagagatctcacctcatt |
30965564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University