View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_low_6 (Length: 559)

Name: NF17318_low_6
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_low_6
NF17318_low_6
[»] chr6 (2 HSPs)
chr6 (303-545)||(22538136-22538378)
chr6 (12-260)||(22537845-22538093)
[»] chr7 (6 HSPs)
chr7 (104-206)||(8157870-8157970)
chr7 (39-165)||(21227836-21227965)
chr7 (146-213)||(10480368-10480435)
chr7 (13-213)||(1252695-1252898)
chr7 (104-206)||(19398421-19398523)
chr7 (18-59)||(10480263-10480304)
[»] chr5 (3 HSPs)
chr5 (99-144)||(27920952-27920997)
chr5 (174-206)||(23014229-23014261)
chr5 (174-206)||(26252263-26252295)
[»] chr1 (2 HSPs)
chr1 (97-202)||(13134616-13134727)
chr1 (174-206)||(25534298-25534330)
[»] scaffold0090 (1 HSPs)
scaffold0090 (329-375)||(7440-7487)
[»] chr8 (3 HSPs)
chr8 (328-375)||(6884982-6885029)
chr8 (99-206)||(26614802-26614909)
chr8 (328-375)||(27659469-27659517)
[»] scaffold0019 (1 HSPs)
scaffold0019 (347-375)||(181752-181780)
[»] chr4 (1 HSPs)
chr4 (147-203)||(22526724-22526780)
[»] chr3 (4 HSPs)
chr3 (174-206)||(20398068-20398100)
chr3 (174-202)||(25757174-25757202)
chr3 (174-206)||(27854149-27854181)
chr3 (174-202)||(28729199-28729227)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 303 - 545
Target Start/End: Original strand, 22538136 - 22538378
Alignment:
Q  303 aataaataacacaagttgccttgttgaaacgacaattcttgtaaatacgatactcatttatcactttattactctgtaaggatgctttttataggagcgg 402  Q
    |||||||||  |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||     
T  22538136 aataaataatgcaagttgccttgttgaaacgacaattctcgtgaatacgatactcacttatcactttattactttgtaacgatgctttttataagagcga 22538235  T
Q  403 taattgtccatgagagattacaccattgtaatctaggaaaggctctcttagaatccaagagataggtcatggtagattgatgaataatgatgataggcac 502  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22538236 taattgtccatgagagattacaccattgtagtctaggaaaggctctcttagaatccaagagataggtcatggtagattgatgaataatgatgatagccac 22538335  T
Q  503 cacaatgggtatgccaactccaatttgtgcctgagatataatt 545  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22538336 cacaatgggtatgccaactccaatttgtgcctgagatataatt 22538378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 22537845 - 22538093
Alignment:
Q  12 atgaatgttgcatagtaattctactctttttatcattggtaaggtagacgagtaatgttgcccgtatgtagaactaccaatacaaagtatgctgatgtac 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  22537845 atgaacgttgcatagtaattctactctttttatcattggtaaggtagacgagtaacgttgcccgtatgtagaactaccaagacagagtatgctgatgtac 22537944  T
Q  112 ttctaagattcatatatgagtgaaccttcaggaaaaatttaagaaccctaatttttgtgtgcgtttcaattacctctgagagagtaagaccccacctaat 211  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||    
T  22537945 ttctaagattcatatatgagtgaaccattaggaaaaatttaggaaccctaatttctgtctgcttttcaattacctctgagagagtaagaccccgcctaat 22538044  T
Q  212 actcaactatcgttgtgagcaaacatattaaattgcaaaaacttcccta 260  Q
    |||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  22538045 actcaactattgttgtgagcaaacaaattaaattgcaaaaactccccta 22538093  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 8157970 - 8157870
Alignment:
Q  104 tgatgtacttctaagattcatatatgagtgaaccttcaggaaaaatttaagaaccctaatttttgtgtgcgtttcaattacctctgagagagtaagaccc 203  Q
    |||||||||||||||||||||| |||||  |||||  |||| |||||||||||  |||||||  || |  |||||||||||||||  |||||||||||||    
T  8157970 tgatgtacttctaagattcatagatgaggaaacctctaggataaatttaagaattctaatttaagtctatgtttcaattacctct--gagagtaagaccc 8157873  T
Q  204 cac 206  Q
    |||    
T  8157872 cac 8157870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 21227965 - 21227836
Alignment:
Q  39 ttttatcattggtaaggtagacgag-taatgttgcccgtatgtagaactaccaata--caaagtatgctgatgtacttctaagattcatatatgagtgaa 135  Q
    ||||||| |||||||| ||||| || ||  |||||| || |||||||||||||| |   | ||||||||||||||||||||||||| ||| ||||| |||    
T  21227965 ttttatccttggtaagatagacaagatagggttgcctgtttgtagaactaccaagaggaagagtatgctgatgtacttctaagattaatagatgagggaa 21227866  T
Q  136 ccttcaggaaaaatttaagaaccctaattt 165  Q
    |||| |||| ||||| | |||| |||||||    
T  21227865 cctttaggataaattcaggaactctaattt 21227836  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 10480368 - 10480435
Alignment:
Q  146 aaatttaagaaccctaatttttgtgtgcgtttcaattacctctgagagagtaagaccccacctaatac 213  Q
    ||||||| ||||||||||||  ||   |||||||||||||||| ||||||||||| ||||||||||||    
T  10480368 aaatttaggaaccctaatttaagtccacgtttcaattacctctaagagagtaagatcccacctaatac 10480435  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 1252898 - 1252695
Alignment:
Q  13 tgaatgttgcatagtaattctactctttttatcattggtaaggtagacgagtaat-gttgcccgtatgtagaactaccaatacaaa---gtatgctgatg 108  Q
    ||||||||||||| ||||| ||||||||  ||| ||| |||||||||| ||  || |||| |||| |||||||||| ||| |||||   |||| || |||    
T  1252898 tgaatgttgcataataattttactctttc-atccttgataaggtagacaagatatagttgaccgtttgtagaactatcaagacaaaagagtatactaatg 1252800  T
Q  109 tacttctaagattcatatatgagtgaaccttcaggaaaaatttaagaaccctaatttttgtgtgcgtttcaattacctctgagagagtaagaccccacct 208  Q
    || ||||||||||| || ||||| |||  || | || |||||||| ||| |||||||  || |  |||||||||| || ||||| || | ||||||||||    
T  1252799 tatttctaagattcgtagatgagagaatatttatgataaatttaaaaactctaatttaagtctatgtttcaattatctttgagaaagcatgaccccacct 1252700  T
Q  209 aatac 213  Q
    |||||    
T  1252699 aatac 1252695  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 19398421 - 19398523
Alignment:
Q  104 tgatgtacttctaagattcatatatgagtgaaccttcaggaaaaatttaagaaccctaatttttgtgtgcgtttcaattacctctgagagagtaagaccc 203  Q
    ||||| |||||||||||||| | ||||   |||||| |||| ||||||| |||| |||||||  || |  |||||||||| |||| |||||| |||||||    
T  19398421 tgatgaacttctaagattcaaagatgacataacctttaggataaatttaggaactctaatttaagtctatgtttcaattagctcttagagagaaagaccc 19398520  T
Q  204 cac 206  Q
    |||    
T  19398521 cac 19398523  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 10480263 - 10480304
Alignment:
Q  18 gttgcatagtaattctactctttttatcattggtaaggtaga 59  Q
    |||||||||||||| ||||||||| ||| |||||||||||||    
T  10480263 gttgcatagtaattttactcttttcatctttggtaaggtaga 10480304  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 27920952 - 27920997
Alignment:
Q  99 tatgctgatgtacttctaagattcatatatgagtgaaccttcagga 144  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  27920952 tatgctgatgtacttctaagattcatagatgagggaacctttagga 27920997  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 23014229 - 23014261
Alignment:
Q  174 gtttcaattacctctgagagagtaagaccccac 206  Q
    |||| ||||||||||||||||||||||||||||    
T  23014229 gttttaattacctctgagagagtaagaccccac 23014261  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 26252295 - 26252263
Alignment:
Q  174 gtttcaattacctctgagagagtaagaccccac 206  Q
    |||| ||||||||||||||||||||||||||||    
T  26252295 gtttgaattacctctgagagagtaagaccccac 26252263  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 13134616 - 13134727
Alignment:
Q  97 agtatgctgatgtacttctaagattcatatatgagtgaaccttcagga------aaaatttaagaaccctaatttttgtgtgcgtttcaattacctctga 190  Q
    |||||| |||||||| ||||||||||||| ||||||||||||| || |       |||||||||||| | |||||  || |  | |||||||||||||||    
T  13134616 agtatgttgatgtacatctaagattcatagatgagtgaacctttagcaccattggaaatttaagaactcaaatttaagtttatgcttcaattacctctga 13134715  T
Q  191 gagagtaagacc 202  Q
    ||||||||||||    
T  13134716 gagagtaagacc 13134727  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 25534298 - 25534330
Alignment:
Q  174 gtttcaattacctctgagagagtaagaccccac 206  Q
    |||||||||| ||||||||||||||||||||||    
T  25534298 gtttcaattatctctgagagagtaagaccccac 25534330  T

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Target: scaffold0090 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 7440 - 7487
Alignment:
Q  329 aaacgacaattcttgtaaatacgatactc-atttatcactttattact 375  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||||    
T  7440 aaacgacaattcttgtaaatacaatactctacttatcactttattact 7487  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 6885029 - 6884982
Alignment:
Q  328 gaaacgacaattcttgtaaatacgatactcatttatcactttattact 375  Q
    ||||||||||| | |||| |||||||||||| ||||||||||||||||    
T  6885029 gaaacgacaatccatgtagatacgatactcacttatcactttattact 6884982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 26614802 - 26614909
Alignment:
Q  99 tatgctgatgtacttctaagattcatatatgagtgaaccttcaggaaaaatttaagaaccctaatttttgtgtgcgtttcaattacctctgagagagtaa 198  Q
    ||||| ||||||||||||||||||||| ||||  |||| || | || ||||||| |||| |||||||  || |  | ||||||||| | | |||||||||    
T  26614802 tatgccgatgtacttctaagattcataaatgatagaacatttaagataaatttaggaactctaatttaagtatatgcttcaattacttttaagagagtaa 26614901  T
Q  199 gaccccac 206  Q
    ||||||||    
T  26614902 gaccccac 26614909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 27659517 - 27659469
Alignment:
Q  328 gaaacgacaattcttgtaaatacgatactc-atttatcactttattact 375  Q
    ||||||||||| |||||| ||||||||||| | ||||||||||||||||    
T  27659517 gaaacgacaatccttgtagatacgatactctacttatcactttattact 27659469  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 375
Target Start/End: Original strand, 181752 - 181780
Alignment:
Q  347 atacgatactcatttatcactttattact 375  Q
    |||||||||||||||||||||||||||||    
T  181752 atacgatactcatttatcactttattact 181780  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 22526780 - 22526724
Alignment:
Q  147 aatttaagaaccctaatttttgtgtgcgtttcaattacctctgagagagtaagaccc 203  Q
    |||||| |||| |||||||  ||||  ||||||||||||||| ||||||||||||||    
T  22526780 aatttaggaacgctaatttaagtgtatgtttcaattacctctaagagagtaagaccc 22526724  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 20398100 - 20398068
Alignment:
Q  174 gtttcaattacctctgagagagtaagaccccac 206  Q
    |||||||||||||||||| ||||||||||||||    
T  20398100 gtttcaattacctctgagcgagtaagaccccac 20398068  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 25757202 - 25757174
Alignment:
Q  174 gtttcaattacctctgagagagtaagacc 202  Q
    |||||||||||||||||||||||||||||    
T  25757202 gtttcaattacctctgagagagtaagacc 25757174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 27854149 - 27854181
Alignment:
Q  174 gtttcaattacctctgagagagtaagaccccac 206  Q
    ||||||||||||||||||||||||| |||||||    
T  27854149 gtttcaattacctctgagagagtaaaaccccac 27854181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 28729227 - 28729199
Alignment:
Q  174 gtttcaattacctctgagagagtaagacc 202  Q
    |||||||||||||||||||||||||||||    
T  28729227 gtttcaattacctctgagagagtaagacc 28729199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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