View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_62 (Length: 234)
Name: NF17318_low_62
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 32958661 - 32958455
Alignment:
| Q |
14 |
aatattagctcaaaaacctacaccatgtttgaagtgaaaaaacataataactatgattcagcttggatcatcgttaacggtcacgtttatgattgcactc |
113 |
Q |
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| T |
32958661 |
aatattagctcaaaaacatacaccatgtttgaagtgaaaaaacataataactctgattcagcttggatcatcgttaacggtcacgtttatgattgcactc |
32958562 |
T |
|
| Q |
114 |
actaccttaaagaccacccaggaggcgttgatagcatcctgatcaacgctggcactgattgtacagaggagtttgaagccatacactccgataaagcaaa |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32958561 |
actaccttaaagaccacccaggaggcgtcgatagcatcctgatcaacgctggcactgattgtacagaggagtttgaagccatacactctgataaagcaaa |
32958462 |
T |
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| Q |
214 |
gaaaatg |
220 |
Q |
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||||||| |
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| T |
32958461 |
gaaaatg |
32958455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 32988068 - 32987868
Alignment:
| Q |
19 |
tagctcaaaaacctacaccatgtttgaagtgaaaaaacataataactatgattcagcttggatcatcgttaacggtcacgtttatgattgcactcactac |
118 |
Q |
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| T |
32988068 |
tagctcaaaaacctacaccatttctgaagtagaaaaacataataacgctgaatcagcatggatcattgtccatggccacgtctatgactgcacacgtttc |
32987969 |
T |
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| Q |
119 |
cttaaagaccacccaggaggcgttgatagcatcctgatcaacgctggcactgattgtacagaggagtttgaagccatacactccgataaagcaaagaaaa |
218 |
Q |
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| T |
32987968 |
atcaaagatcaccctggtggtgccgatagcatcctcatcaatgctggcaccgattgtacagaggagttcgaagcaatccactctgacaaagccaagaaaa |
32987869 |
T |
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| Q |
219 |
t |
219 |
Q |
| |
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| |
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| T |
32987868 |
t |
32987868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 24862059 - 24861909
Alignment:
| Q |
67 |
tgattcagcttggatcatcgttaacggtcacgtttatgattgcactcactaccttaaagaccacccaggaggcgttgatagcatcctgatcaacgctggc |
166 |
Q |
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|||||| |||||||||||||| |||| | || || || ||||| | || ||||||||||||||| || ||| || || ||| ||||||| || ||| |
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| T |
24862059 |
tgattctgcttggatcatcgtccacggcaatgtctacgactgcacccgcttccttaaagaccaccccggtggctcagacagtatcttgatcaatgccggc |
24861960 |
T |
|
| Q |
167 |
actgattgtacagaggagtttgaagccatacactccgataaagcaaagaaa |
217 |
Q |
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||||||||||| || || || ||||| || |||||||||||||| |||||| |
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| T |
24861959 |
actgattgtaccgatgaattcgaagctatccactccgataaagcgaagaaa |
24861909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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