View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17318_low_67 (Length: 209)
Name: NF17318_low_67
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_67 |
 | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 7094372 - 7094548
Alignment:
| Q |
16 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094372 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
7094471 |
T |
|
| Q |
116 |
ctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094472 |
ctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
7094548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 7098105 - 7098281
Alignment:
| Q |
16 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098105 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
7098204 |
T |
|
| Q |
116 |
ctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098205 |
ctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
7098281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 8377429 - 8377253
Alignment:
| Q |
16 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8377429 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
8377330 |
T |
|
| Q |
116 |
ctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8377329 |
ctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
8377253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 22362636 - 22362480
Alignment:
| Q |
36 |
agtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcactatgc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362636 |
agtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcactatgc |
22362537 |
T |
|
| Q |
136 |
ttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362536 |
ttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattg |
22362480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 33886042 - 33885870
Alignment:
| Q |
16 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33886042 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccactaactcccttc |
33885943 |
T |
|
| Q |
116 |
ct-aaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacatt |
188 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
33885942 |
ctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaaggaggttacatt |
33885870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 33958210 - 33958382
Alignment:
| Q |
16 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33958210 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccactaactcccttc |
33958309 |
T |
|
| Q |
116 |
ct-aaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacatt |
188 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
33958310 |
ctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaaggaggttacatt |
33958382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 14097596 - 14097472
Alignment:
| Q |
25 |
agtgtagaatcagtaaagtggtgaatgaatg----gaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaa |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||| |||| ||| || |||||||||||| || | |
|
|
| T |
14097596 |
agtgtagaatcagtagagtggtgaatgaatgaatagaataaatgaggtaaccgattgttattaatagtgagataaaccttcctctaactcccttcttaga |
14097497 |
T |
|
| Q |
121 |
agagtggcactatgcttaaggagtg |
145 |
Q |
| |
|
||||||| |||| | ||||||||| |
|
|
| T |
14097496 |
tgagtggctctatacctaaggagtg |
14097472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 41314476 - 41314602
Alignment:
| Q |
17 |
ttcttcagagtgtagaatcagtaaa-gtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||| | ||| ||| | | ||||||| ||||||||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
41314476 |
ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc |
41314575 |
T |
|
| Q |
116 |
ctaaaagagtggcactatgcttaagga |
142 |
Q |
| |
|
||| | |||||||||||| ||| |||| |
|
|
| T |
41314576 |
ctagatgagtggcactatacttgagga |
41314602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 11993058 - 11993228
Alignment:
| Q |
16 |
tttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||| |||| |||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
11993058 |
tttctttaaagtgtagaaccagtaaagtggtgaatgaaaggaacaaaggaggtaactgattgttattaataatgaaataacc-tcccactaactcccttc |
11993156 |
T |
|
| Q |
116 |
ctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacatt |
188 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11993157 |
ctaaaagagtggcactaggcttaaggagtgtgaagtgaaattgacc-atgtaactaggaaaggaggttacatt |
11993228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 48188978 - 48189138
Alignment:
| Q |
25 |
agtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagag |
124 |
Q |
| |
|
|||||||||||||||||| |||||| || |||| | ||| |||||| | || || || ||||||||||| |||||||||| ||||||||||| | | |
|
|
| T |
48188978 |
agtgtagaatcagtaaagaaatgaatgcatagaatgagagaggcaaccgactattgttcatagtgaaataacc-tcccactaac-cccttcctaaatggg |
48189075 |
T |
|
| Q |
125 |
tggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacatt |
188 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48189076 |
tggcactatgcttaagaagtggaaagtgaaattgacc-atgtaactaggaaaggaggttacatt |
48189138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 2187003 - 2186878
Alignment:
| Q |
17 |
ttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc |
116 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | ||| ||| | | ||||||| ||||||||||| | |||||||||| ||||||||||||| ||||| |
|
|
| T |
2187003 |
ttcttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttcc |
2186904 |
T |
|
| Q |
117 |
taaaagagtggcactatgcttaagga |
142 |
Q |
| |
|
|| | |||||||||||| ||| |||| |
|
|
| T |
2186903 |
tagatgagtggcactatacttgagga |
2186878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 21270164 - 21270258
Alignment:
| Q |
88 |
tgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttac |
185 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21270164 |
tgaaataacc-tcccactaac-cccttcctaaatgagtggcactatgcttaagaagtggaaagtgaaactgacc-atgtaactaggaaaggaggttac |
21270258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 19633140 - 19633263
Alignment:
| Q |
19 |
cttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttccta |
118 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | ||| ||| | | ||||||| ||||||| ||| | || ||||||| ||||||||||||| ||||||| |
|
|
| T |
19633140 |
cttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttgttattagttaaataactctcccactaactctcttccta |
19633239 |
T |
|
| Q |
119 |
aaagagtggcactatgcttaagga |
142 |
Q |
| |
|
| |||||||||||| ||| |||| |
|
|
| T |
19633240 |
gatgagtggcactatacttgagga |
19633263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 1609045 - 1609169
Alignment:
| Q |
17 |
ttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc |
116 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | ||| ||| | | ||||||| ||||||| ||| || ||||||||| |||||||||||| ||||| |
|
|
| T |
1609045 |
ttcttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttgtta-ttatgaaataactatcccactaactctcttcc |
1609143 |
T |
|
| Q |
117 |
taaaagagtggcactatgcttaagga |
142 |
Q |
| |
|
|| | |||||||||||| ||| |||| |
|
|
| T |
1609144 |
tagatgagtggcactatacttgagga |
1609169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 37627611 - 37627737
Alignment:
| Q |
17 |
ttcttcagagtgtagaatcagtaaa-gtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||| | ||| ||| | | ||||||| ||||||||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
37627611 |
ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc |
37627710 |
T |
|
| Q |
116 |
ctaaaagagtggcactatgcttaagga |
142 |
Q |
| |
|
||| | |||||||||||| ||| |||| |
|
|
| T |
37627711 |
ctagatgagtggcactatacttgagga |
37627737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 37806734 - 37806860
Alignment:
| Q |
17 |
ttcttcagagtgtagaatcagtaaa-gtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc |
115 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||| | ||| ||| | | ||||||| ||||||||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
37806734 |
ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc |
37806833 |
T |
|
| Q |
116 |
ctaaaagagtggcactatgcttaagga |
142 |
Q |
| |
|
||| | |||||||||||| ||| |||| |
|
|
| T |
37806834 |
ctagatgagtggcactatacttgagga |
37806860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 14276890 - 14276942
Alignment:
| Q |
33 |
atcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaat |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
14276890 |
atcagtaaagtggtgaatgaatggaataaaggaggtaaccgattgctattaat |
14276942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 2963 - 3048
Alignment:
| Q |
101 |
ccactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacatt |
188 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| | | | |||| ||||||||| ||||||||||| |
|
|
| T |
2963 |
ccactaactcccttcctaaaagagtgacactatgcttatgaggtgggaagtgaaact-agccatgt-actaggaaaagaggttacatt |
3048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 35918850 - 35918799
Alignment:
| Q |
123 |
agtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaa |
175 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||| ||||||||||||| |
|
|
| T |
35918850 |
agtggcactatgcttaaggagtggaaagtgaaactaacc-atgtaactaggaa |
35918799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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