View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_7 (Length: 548)
Name: NF17318_low_7
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 25 - 530
Target Start/End: Original strand, 8172904 - 8173424
Alignment:
| Q |
25 |
tagcctatttattacgtcttcttaagaatgaaaaagtgttagatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtca |
124 |
Q |
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| T |
8172904 |
tagccaatttattacgtcctcttaagaatgaaaaagtgttagatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtca |
8173003 |
T |
|
| Q |
125 |
attatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagattatga |
224 |
Q |
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| T |
8173004 |
attatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatc-tacacaatgatgttaattccttggctaagttggaagattatgt |
8173102 |
T |
|
| Q |
225 |
aaatcaattgggtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagttgaaatattcagaggctgaacttgttggaatctcgaat |
324 |
Q |
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| T |
8173103 |
taatcaattgtgtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagttgaaatattcagaggctgaacttgttggaatctcgaat |
8173202 |
T |
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| Q |
325 |
cgtctccccatggatgaagaaaatcttc----------------gaatataagtcaaacaatggaaaccttcttacaacaacgtgaagctaaacaaacag |
408 |
Q |
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| T |
8173203 |
cgtctccccatggatgaagaaaatcgtcgaatattggaaattaagaatataagtcaaacaatggaaaccttcttacaacaacgtgaagctaaacaaacag |
8173302 |
T |
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| Q |
409 |
agattgaacaagtttttatgaagaagatggatgtgttaaagggtagagctcaattagatactttagaggtggatttttcctgtccccaccctttttagaa |
508 |
Q |
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| T |
8173303 |
agattgaacaagtttttatgaagaagatggatgtgttaaagggtagagctcaattagatactttagaggtggatttttcctgtccccaccctttttagaa |
8173402 |
T |
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| Q |
509 |
ataaaatatgataggatagtta |
530 |
Q |
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| T |
8173403 |
ataaaatatgataggatagtta |
8173424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 8225690 - 8225459
Alignment:
| Q |
25 |
tagcctatttattacgtcttcttaagaatgaaaaagtgttagatata---cttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacg |
121 |
Q |
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||||| ||||||||||||| ||||| ||||||| |||||||||||| |||||||||||| |||| ||||||| || ||||| |||||||||||||| |
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| T |
8225690 |
tagccgatttattacgtctgattaaggatgaaaaggtgttagatataatacttgacaaaaaaaggaattctgaggtaaagtatatggtgaatgatctacg |
8225591 |
T |
|
| Q |
122 |
tcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagatta |
221 |
Q |
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| T |
8225590 |
tcaattttcttttcaaggttcgtggcttgattcaatagaaaaattatttgttaataat-ctacacgatgatgttagttctttggttaagttggaagatca |
8225492 |
T |
|
| Q |
222 |
tgaaaatcaattgggtaatgaacatatgtttct |
254 |
Q |
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| T |
8225491 |
tgaaaatcaactgtgtaaggaacataggtttct |
8225459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 7591223 - 7591389
Alignment:
| Q |
31 |
atttattacgtcttcttaa-gaatgaaaaagtgttagatat----acttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaa |
125 |
Q |
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||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7591223 |
atttattgcgtgttcttaaagaatgaataagtgttagatatatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaa |
7591322 |
T |
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| Q |
126 |
ttatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatg |
193 |
Q |
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| T |
7591323 |
ttatcatttcaaggttcgtggcttgattcaatagaaaagttatttgctaataat-ctacataatgatg |
7591389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 427
Target Start/End: Original strand, 44105684 - 44105742
Alignment:
| Q |
369 |
atggaaaccttcttacaacaacgtgaagctaaacaaacagagattgaacaagtttttat |
427 |
Q |
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| T |
44105684 |
atggaaaccttcatacaacaatgtgaagctaaacaaacagagattgaacaagtctttat |
44105742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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