View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_1 (Length: 630)
Name: NF1731_high_1
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 10146386 - 10146667
Alignment:
| Q |
18 |
aaaggaatggagtggttaatgatcctaaaacaaccccatttttcacatgcatctcttaactttttgcactcgaattgctctgaaattttctcaatatcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10146386 |
aaaggaatggagtggttaatgatcctaaaacaaccccatttttcacatgcatctcttaactttttgcactcgaattgctctgaaatcttctcaatatcaa |
10146485 |
T |
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| Q |
118 |
tcactggaatagtctcatccgtcattttctagttgctttttctttttctgtttcttctattgggtgggtaatgtaaggaaaaaatatagagatacaaata |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
10146486 |
tcactggaatggtctcatccgtcattttctagttgctttttctttttctgtttcttctattgggtgggtaatgtagggagaaaatatagagatgcaaata |
10146585 |
T |
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| Q |
218 |
tataaatagatattattggtcagttatccataacttttatatattaaagctatctttagtcaaaaaagatgttaagatattc |
299 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10146586 |
tacaaatagatattattggtcaattatccataacttttatatattaaagctatctttagtcaaaaaagatgttcagatattc |
10146667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 10089738 - 10089887
Alignment:
| Q |
18 |
aaaggaatggagtggttaatgatcctaaaacaaccccatttttcacatgcatctcttaactttttgcactcgaattgctctgaaattttctcaatatcaa |
117 |
Q |
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|||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||| |
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| T |
10089738 |
aaaggaatagaatggttaatgatcctgaaacaaccccatttttcacatgcatttcttaacttgttgcactcgaattgctctgaaatcttctcaagatcaa |
10089837 |
T |
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| Q |
118 |
tcactggaatagtctcatccgtca-ttttctagttgctttttctttttct |
166 |
Q |
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| T |
10089838 |
tgtatggaatggtctcacccgtcatttttcctgttgctttttctttttct |
10089887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 10141374 - 10141483
Alignment:
| Q |
18 |
aaaggaatggagtggttaatgatcctaaaacaaccccatttttcacatgcatctcttaactttttgcactcgaattgctctgaaattttctcaatatcaa |
117 |
Q |
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|||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
10141374 |
aaaggaatagagtggttaatgattctgaaacaaccccatctttcacatgcatctcttaactttttgcactcgagttgctctgaaattttctcaagatcaa |
10141473 |
T |
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| Q |
118 |
tcactggaat |
127 |
Q |
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|||||||||| |
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| T |
10141474 |
tcactggaat |
10141483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 11301004 - 11300858
Alignment:
| Q |
18 |
aaaggaatggagtggttaatgatcctaaaacaaccccatttttcacatgcatctcttaactttttgcactcgaattgctctgaaattttctcaatatcaa |
117 |
Q |
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|||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||| |
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| T |
11301004 |
aaaggaatagaatggttgataatcctaaaacaaccccatttttcacatgcatctcttaacttcttgcactcgaattgctctaaaatcttctcaagatcaa |
11300905 |
T |
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| Q |
118 |
tcactggaatagtctcatccgtcattttctagttgctttttcttttt |
164 |
Q |
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| | |||||||||||| |||||||||| |||||||||| ||||| |
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| T |
11300904 |
tgaacggaatagtctcacccgtcatttttctgttgctttttattttt |
11300858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 10152996 - 10153110
Alignment:
| Q |
19 |
aaggaatggagtggttaatgatcctaaaacaaccccatttttcacatgcatctcttaactttttgcactcgaattgctctgaaattttctcaatatcaat |
118 |
Q |
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||||||| |||||||| ||||| || |||||||||||| |||||||||| ||||||| |||| ||| ||| ||||||||||||| ||||||| |||||| |
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| T |
10152996 |
aaggaatagagtggttgatgattctgaaacaaccccatctttcacatgcttctcttagtttttggcattcggattgctctgaaatcttctcaagatcaat |
10153095 |
T |
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| Q |
119 |
cactggaatagtctc |
133 |
Q |
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| T |
10153096 |
cactggaatagtctc |
10153110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 11298471 - 11298372
Alignment:
| Q |
204 |
tagagatacaaatatataaatagatattattggtcagttatccataacttttatatattaaagctatctttagtcaaaaaagatgttaagatattcaata |
303 |
Q |
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|||||||||||||||||| || |||| | | |||| |||| |||||| || |||||||||| |||||||||||||||||||||| |||||||| |||| |
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| T |
11298471 |
tagagatacaaatatatacgtacatatcaattgtcaattatacataacattc-tatattaaagatatctttagtcaaaaaagatgtaaagatatttaata |
11298373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 382 - 630
Target Start/End: Original strand, 43443536 - 43443784
Alignment:
| Q |
382 |
atgtgagaacatattatcaaccattggattcaaaatgaagggctaagattaaaacactccactaaagtaatcatgtgaccaattttcacatactctctcg |
481 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43443536 |
atgtgagaatatattatcaaccactggattcaaaatgaagggctaagattaaaacactccgctaaagtaatcatgtgaccaattttcacatactctctcg |
43443635 |
T |
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| Q |
482 |
taactgttcaactatccagcaccaccaccgcttcatctttccagcacctatcactgattcaccattgatgatgcaaacgtgaaccaacctgctaccctct |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
43443636 |
taactgttcaactatccagcaccaccaccgcttcatctttccagcagctatcactgattcaccattgatgatgcatacgtaaacaaacctgctaccctct |
43443735 |
T |
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| Q |
582 |
tttatgataccatcaatcatttgctcatctacataatggtggatttgtt |
630 |
Q |
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| T |
43443736 |
tttatgataccatcaatcatttgctcatctacataatggtggatttgtt |
43443784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 382 - 630
Target Start/End: Original strand, 45223805 - 45224056
Alignment:
| Q |
382 |
atgtgagaacatattatcaaccattggattcaaaatgaagggctaagattaaaacactccactaaagtaatcatgtgaccaattttcacatactctctcg |
481 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45223805 |
atgtgagaacatattatcaatcaccggattcaaaatgaagggctaagattaaaacactccactaaagtaatcatgcgaccaattttcacatactctctcg |
45223904 |
T |
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| Q |
482 |
taactgttcaactatccagcaccaccaccgcttcatctttccagcacctatcactgattcaccattgatgatgcaaacgtgaaccaacctgctaccctct |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45223905 |
taactgttcaactatccagcaccaccaccgcttcatctttccaacacctatcaccgattcaccattgacgatgcaaacgtgaaccaacctgctaccctct |
45224004 |
T |
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| Q |
582 |
tttatgataccatcaatcatttgctcatctaca---taatggtggatttgtt |
630 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45224005 |
tttatgataccatcaatcatttgctcatctacatattaatggtggatttgtt |
45224056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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