View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731_high_11 (Length: 437)
Name: NF1731_high_11
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 15812075 - 15811803
Alignment:
| Q |
14 |
cagaagtcactaaaatcctatggaattaacatgaacgcataaaggaagcgattcaattcacttcatgtatatcaaatatatcaatatcaacaaaacctat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15812075 |
cagaagtcactaaaatcctatggaattaacatgaacgcataaaggaagcgattcaattcacttcatgtatatcaaatatatcaatatcaacaaaacctat |
15811976 |
T |
|
| Q |
114 |
aatcctcatagtccttacaagcaacaagtaaaccaaaatattaacgaataaagttttgaacaatctcatttctcctgattgagaggtgtattacaatagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15811975 |
aatcctcatagtccttacaagcaacaagtaaaccaaaatattaacgaataaagttttgaacaatctcatttctcctgattgagaggtgtattacaatagt |
15811876 |
T |
|
| Q |
214 |
agttctgcataaggaaagaaacaaacac--tgtttttcaatcagatgctataaatcaaaaccacatggtatta |
284 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15811875 |
agttctgcataaggaaagaaacaaacactgtgtttttcaatcagatgctataaatcaaaaccgcatggtatta |
15811803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 15811740 - 15811680
Alignment:
| Q |
367 |
gttatcttaaatcttaaagaaaacacagaagaaagcacctggttaaaccacgacatctgtg |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15811740 |
gttatcttaaatcttaaagaaaacacagaagaaagcacctggttaaaccacgacatctgtg |
15811680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 15798501 - 15798380
Alignment:
| Q |
92 |
tatcaatatcaacaaaacctataatcctcatagtccttacaagcaacaagtaaaccaaaatattaacgaataaagttttg-aacaatctcatttctcctg |
190 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||| | ||||| |||||||||| | |
|
|
| T |
15798501 |
tatcaatatcaacaaagcctctaatcttcatactccttccaatcaacaagtaaaccaaaatattaacgaataaagtttcgaaacaacctcatttctctta |
15798402 |
T |
|
| Q |
191 |
attgagaggtgtattacaatag |
212 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
15798401 |
tttgatgggtgtattaaaatag |
15798380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 15804073 - 15804033
Alignment:
| Q |
148 |
aaaatattaacgaataaagttttgaa-caatctcatttctc |
187 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15804073 |
aaaatattaacgaataaagttttgaagcaatctcatttctc |
15804033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 15804171 - 15804126
Alignment:
| Q |
39 |
ttaacatg-aacgcataaaggaagcgattcaattcacttcatgtat |
83 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
15804171 |
ttaacatgtaacacataaaggaagcgattcaattcgcttcatgtat |
15804126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University