View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_high_16 (Length: 422)

Name: NF1731_high_16
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_high_16
NF1731_high_16
[»] chr8 (22 HSPs)
chr8 (16-413)||(1560996-1561393)
chr8 (16-416)||(2091461-2091879)
chr8 (112-197)||(31884527-31884617)
chr8 (110-162)||(34770865-34770917)
chr8 (112-155)||(9834836-9834879)
chr8 (109-162)||(6509347-6509400)
chr8 (113-153)||(7514560-7514600)
chr8 (108-156)||(7645957-7646005)
chr8 (16-126)||(14949875-14949982)
chr8 (112-191)||(33697004-33697083)
chr8 (16-106)||(6950349-6950438)
chr8 (158-199)||(9928187-9928228)
chr8 (39-143)||(11183537-11183638)
chr8 (158-199)||(11188253-11188294)
chr8 (110-198)||(29973013-29973106)
chr8 (28-84)||(779027-779083)
chr8 (36-84)||(2095960-2096008)
chr8 (112-156)||(8062503-8062547)
chr8 (108-156)||(30013197-30013245)
chr8 (52-139)||(39551199-39551283)
chr8 (112-156)||(41336692-41336736)
chr8 (116-199)||(42597332-42597420)
[»] chr4 (31 HSPs)
chr4 (16-156)||(2996552-2996689)
chr4 (19-84)||(27721765-27721830)
chr4 (51-156)||(23819068-23819170)
chr4 (109-162)||(35517177-35517230)
chr4 (114-199)||(30207620-30207709)
chr4 (110-156)||(42866047-42866093)
chr4 (109-162)||(10192257-10192310)
chr4 (52-152)||(29263353-29263450)
chr4 (109-162)||(32920444-32920497)
chr4 (22-105)||(27123312-27123394)
chr4 (158-193)||(47946135-47946170)
chr4 (112-186)||(49219083-49219162)
chr4 (55-156)||(19250526-19250623)
chr4 (51-156)||(20936218-20936320)
chr4 (22-84)||(33534129-33534191)
chr4 (51-105)||(46110231-46110284)
chr4 (158-199)||(4191670-4191711)
chr4 (113-162)||(11802507-11802556)
chr4 (109-166)||(20907316-20907373)
chr4 (158-199)||(28623220-28623261)
chr4 (109-162)||(35958628-35958681)
chr4 (158-199)||(40709478-40709519)
chr4 (158-199)||(46176104-46176145)
chr4 (158-199)||(47970249-47970290)
chr4 (112-195)||(8422886-8422972)
chr4 (114-162)||(13949893-13949941)
chr4 (16-64)||(18628507-18628555)
chr4 (110-162)||(24370998-24371050)
chr4 (158-198)||(25717434-25717474)
chr4 (114-154)||(29778776-29778816)
chr4 (114-162)||(55870390-55870438)
[»] chr1 (32 HSPs)
chr1 (17-199)||(17269181-17269365)
chr1 (52-162)||(30371121-30371228)
chr1 (51-148)||(37241810-37241905)
chr1 (112-162)||(25006081-25006131)
chr1 (50-143)||(45205060-45205150)
chr1 (109-162)||(7218118-7218171)
chr1 (109-199)||(29045956-29046052)
chr1 (114-162)||(28467356-28467404)
chr1 (109-156)||(25005841-25005888)
chr1 (52-184)||(29007706-29007840)
chr1 (69-129)||(5150943-5151001)
chr1 (109-199)||(6110211-6110303)
chr1 (150-199)||(13037795-13037844)
chr1 (16-128)||(23373267-23373375)
chr1 (113-162)||(27738228-27738277)
chr1 (114-186)||(49517014-49517091)
chr1 (16-64)||(4033971-4034019)
chr1 (112-155)||(12564921-12564964)
chr1 (24-83)||(24153330-24153389)
chr1 (19-94)||(40413979-40414053)
chr1 (157-199)||(4202226-4202268)
chr1 (112-162)||(8130409-8130459)
chr1 (110-156)||(25479560-25479606)
chr1 (20-132)||(27963328-27963437)
chr1 (22-75)||(28482193-28482246)
chr1 (109-162)||(34179916-34179969)
chr1 (158-199)||(37818395-37818436)
chr1 (138-183)||(44115978-44116023)
chr1 (112-156)||(5421967-5422011)
chr1 (114-162)||(5592734-5592782)
chr1 (52-84)||(15064825-15064857)
chr1 (159-203)||(45999387-45999431)
[»] chr6 (22 HSPs)
chr6 (111-203)||(4006641-4006738)
chr6 (110-199)||(2727901-2727995)
chr6 (50-201)||(33558532-33558677)
chr6 (52-150)||(4246395-4246490)
chr6 (16-94)||(32143659-32143737)
chr6 (16-121)||(32577940-32578042)
chr6 (22-162)||(281808-281945)
chr6 (20-191)||(33500438-33500612)
chr6 (85-156)||(25100022-25100091)
chr6 (22-105)||(2460111-2460193)
chr6 (110-199)||(32917157-32917243)
chr6 (109-199)||(32975909-32976004)
chr6 (112-196)||(6647323-6647410)
chr6 (158-199)||(31461609-31461650)
chr6 (15-76)||(32917253-32917314)
chr6 (158-199)||(33068659-33068700)
chr6 (158-198)||(4247732-4247772)
chr6 (110-150)||(8035193-8035233)
chr6 (16-84)||(10031780-10031848)
chr6 (110-198)||(19800481-19800568)
chr6 (16-108)||(30863271-30863362)
chr6 (21-160)||(33887805-33887941)
[»] chr2 (27 HSPs)
chr2 (22-142)||(35485910-35486027)
chr2 (112-199)||(10143103-10143195)
chr2 (109-199)||(17952745-17952840)
chr2 (109-199)||(28803550-28803645)
chr2 (112-162)||(11513871-11513921)
chr2 (52-161)||(43141845-43141951)
chr2 (112-162)||(5043607-5043657)
chr2 (112-197)||(30990421-30990506)
chr2 (130-198)||(41033019-41033088)
chr2 (112-200)||(7936956-7937044)
chr2 (16-84)||(13234554-13234622)
chr2 (16-84)||(44269014-44269082)
chr2 (109-148)||(39983329-39983368)
chr2 (16-154)||(43985190-43985325)
chr2 (88-149)||(15780063-15780122)
chr2 (112-154)||(18066109-18066151)
chr2 (112-154)||(25800810-25800852)
chr2 (51-132)||(43065439-43065517)
chr2 (110-155)||(22681230-22681275)
chr2 (52-128)||(32821816-32821889)
chr2 (22-126)||(34651996-34652097)
chr2 (117-162)||(35755554-35755599)
chr2 (16-105)||(38077027-38077115)
chr2 (109-198)||(41039695-41039784)
chr2 (53-128)||(1939323-1939395)
chr2 (52-84)||(7283044-7283076)
chr2 (111-143)||(34926956-34926988)
[»] chr3 (30 HSPs)
chr3 (16-84)||(24281095-24281163)
chr3 (72-199)||(27792803-27792932)
chr3 (16-131)||(1809981-1810093)
chr3 (16-199)||(27294287-27294462)
chr3 (21-198)||(14548680-14548852)
chr3 (109-156)||(21872315-21872362)
chr3 (113-186)||(24235731-24235809)
chr3 (22-76)||(25182947-25183001)
chr3 (111-198)||(53848109-53848197)
chr3 (158-199)||(16790186-16790227)
chr3 (113-162)||(28306131-28306180)
chr3 (16-128)||(37273141-37273250)
chr3 (113-166)||(41057007-41057060)
chr3 (16-84)||(43875513-43875581)
chr3 (16-143)||(43115048-43115172)
chr3 (74-156)||(2318623-2318703)
chr3 (116-185)||(10101527-10101601)
chr3 (116-154)||(10132769-10132807)
chr3 (116-185)||(10212452-10212526)
chr3 (158-199)||(20173986-20174027)
chr3 (110-151)||(22214704-22214745)
chr3 (109-162)||(24887327-24887380)
chr3 (50-99)||(25447575-25447624)
chr3 (115-203)||(33674707-33674796)
chr3 (110-151)||(39885522-39885563)
chr3 (158-199)||(41159040-41159081)
chr3 (22-82)||(659820-659880)
chr3 (21-61)||(1395710-1395750)
chr3 (112-156)||(23249537-23249581)
chr3 (112-156)||(43875627-43875671)
[»] scaffold0024 (1 HSPs)
scaffold0024 (112-198)||(27508-27599)
[»] chr7 (20 HSPs)
chr7 (117-196)||(24909603-24909682)
chr7 (71-198)||(28165023-28165152)
chr7 (123-199)||(2013130-2013206)
chr7 (22-149)||(4966142-4966266)
chr7 (110-162)||(47046153-47046205)
chr7 (16-83)||(36537957-36538024)
chr7 (24-154)||(48157082-48157209)
chr7 (16-198)||(33894555-33894743)
chr7 (114-162)||(1417237-1417285)
chr7 (121-203)||(45813236-45813323)
chr7 (112-162)||(12110333-12110383)
chr7 (110-156)||(28340889-28340935)
chr7 (18-161)||(34754766-34754905)
chr7 (134-191)||(35007543-35007600)
chr7 (110-155)||(38010694-38010739)
chr7 (46-95)||(39771799-39771847)
chr7 (22-143)||(44151436-44151558)
chr7 (56-154)||(6263358-6263452)
chr7 (86-153)||(40439036-40439101)
chr7 (110-198)||(40530454-40530542)
[»] chr5 (21 HSPs)
chr5 (113-199)||(18704084-18704174)
chr5 (52-161)||(34205213-34205321)
chr5 (27-162)||(14295479-14295611)
chr5 (112-194)||(26209460-26209546)
chr5 (112-199)||(5559661-5559748)
chr5 (71-162)||(19138726-19138816)
chr5 (24-183)||(37588322-37588483)
chr5 (22-129)||(37611175-37611279)
chr5 (22-129)||(37787905-37788009)
chr5 (112-162)||(12975320-12975370)
chr5 (113-194)||(16889671-16889757)
chr5 (109-151)||(18543240-18543282)
chr5 (112-150)||(34245709-34245747)
chr5 (112-162)||(41277397-41277447)
chr5 (113-162)||(6587155-6587204)
chr5 (158-199)||(40048378-40048419)
chr5 (51-83)||(5531083-5531115)
chr5 (116-156)||(10272482-10272522)
chr5 (16-76)||(19177044-19177104)
chr5 (115-143)||(39823171-39823199)
chr5 (25-132)||(40205038-40205141)
[»] scaffold0590 (1 HSPs)
scaffold0590 (158-199)||(1172-1213)
[»] scaffold0275 (1 HSPs)
scaffold0275 (158-199)||(2762-2803)
[»] scaffold0100 (1 HSPs)
scaffold0100 (158-199)||(42548-42589)


Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 1561393 - 1560996
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1561393 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 1561294  T
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcacttatgctaatgctttacgtt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1561293 gcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttatacataagcacttatgctaatgctttacgtt 1561194  T
Q  216 ttcaaggaacacatcagtctattttttccaattttacattgaaaaataatctttcatgttcaattttgaatcctactaacttgagaagtgaataatcaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1561193 ttcaaggaacacatcagtctattttttccaattttacattgaaaaataatctttcatgttcaattttgaatcctactaacttgagaagtgaataatcaat 1561094  T
Q  316 atgaagttcaaggaaactgaacaagagtagtatcttcatttatgtgtatatgcatatttactataatatatctctgatatcagctggttttgtgttct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1561093 atgaagttcaaggaaactgaacaagagtagtatcttcatttatgtgtatatgcatatttactataatatatctctgatatcagctggttgtgtgttct 1560996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 2091879 - 2091461
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2091879 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc-aacttatttctatatgctcttcacaggata 2091781  T
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcactt--------atgctaatgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||        ||||||||||    
T  2091780 gcttatgaaaacaacttgtagcttatattaaaacaatttgagtttgtatttcgttatagaaataacttatacacaagcacttatgcagttatgctaatgc 2091681  T
Q  208 tttacgttttcaaggaacacatcagtctattttttccaattttac-attgaaaaataatctttcatgttcaattttgaatcctactaacttgagaagtga 306  Q
    ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||      |||| || ||||||||||    
T  2091680 tttgcgttttcaaggaacacatcagtctatattttccaattttacaattgaaaaataatctttcgtgttcaaattt------tactgacgtgagaagtga 2091587  T
Q  307 ataatcaatatgaagttcaaggaaactgaacaagagtagt----------------atcttcatttatgtgtatatgcatatttactataatatatctct 390  Q
    ||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||    
T  2091586 ataatcaatatgaagttcaaggaaactgaacaagagtagtataaactataaacataatcttcatttatgtgtatatgcatatttactataatatatctct 2091487  T
Q  391 gatatcagctggttttgtgttctgtg 416  Q
    |||||||||||||| |||||||||||    
T  2091486 gatatcagctggttgtgtgttctgtg 2091461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 31884617 - 31884527
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaa-----caatttgagtttatctttcgttatagaaataacttataaataagcactt 197  Q
    |||||||||||||||||| || |||||||||| ||||     |||||||| ||||| ||| ||||||||||||||||||| ||| ||||||    
T  31884617 gatagcttatgaaaacaatttatagcttatatgaaaacaattcaatttgattttatattttgttatagaaataacttatacatatgcactt 31884527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 34770917 - 34770865
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||| |||||    
T  34770917 aggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttat 34770865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 9834836 - 9834879
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttg 155  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  9834836 gatagcttatgaaaacaacttatagcttatatgaaaacaatttg 9834879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 6509347 - 6509400
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||||||| ||| |||||||||| || ||||||||| |||||    
T  6509347 caggatagcttatgaaaacagcttatagcttatataaatacaatttgactttat 6509400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 7514600 - 7514560
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatt 153  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  7514600 atagcttatgaaaacagcttgtagcttatatgaaaacaatt 7514560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 7646005 - 7645957
Alignment:
Q  108 acaggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||| ||||||||||||||||||| ||||||| || ||||||||||||    
T  7646005 acaggttagcttatgaaaacaacttatagcttacatgaaaacaatttga 7645957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 14949982 - 14949875
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    ||||||| |||||||| |||||  ||||||| |  |||| ||||||||| || |||||||| ||||||| | ||||||||||||  ||||| |  |||||    
T  14949982 ataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttc-agcttatttctataatctcttta--ggata 14949886  T
Q  116 gcttatgaaaa 126  Q
    |||||||||||    
T  14949885 gcttatgaaaa 14949875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 33697004 - 33697083
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataa 191  Q
    |||| ||||| ||||||  || ||| |||||| | |||||||||| ||||||||| |||||||||||| |||||| ||||    
T  33697004 gataacttataaaaacagtttatagattatatcagaacaatttgactttatcttttgttatagaaatagcttatatataa 33697083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 6950438 - 6950349
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctctt 106  Q
    ||||||| ||||||||||||||| ||||||| |   ||||||| ||||| || || |||||||||||| || |||||||| ||| ||||||    
T  6950438 ataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgtttt-cagcttatttccataagctctt 6950349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 9928228 - 9928187
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| ||||||||||||||||||| |||| |||||||    
T  9928228 tttatcttttgttatagaaataacttatacataaacacttat 9928187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 11183638 - 11183537
Alignment:
Q  39 agagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagct 138  Q
    |||||||| | |||||||||||||||||| || ||||| |||||| || |||||||| ||| |||||   |||| |||||| |||||||| ||| |||||    
T  11183638 agagagcttataaaaacaacttatgatatgtctataagctgtttt-cagcttatttccataagctct--ccagggtagcttgtgaaaacagcttatagct 11183542  T
Q  139 tatat 143  Q
     ||||    
T  11183541 aatat 11183537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 11188253 - 11188294
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||| |||||||| ||||||||||||    
T  11188253 tttatcttttgttatagaaacaacttatacataagcacttat 11188294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 29973106 - 29973013
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat-----ctttcgttatagaaataacttataaataagcactta 198  Q
    ||||||||||||||||||||||| |||||||| | |||| | ||||| |||||     |||  |||| ||||||| |||||| |||||||||||    
T  29973106 aggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgttaaagaaatagcttatatataagcactta 29973013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 779027 - 779083
Alignment:
Q  28 gagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    |||||||||||| ||| || || |||||||||||||| || | ||||||||||||||    
T  779027 gagattgtttgaaagaacttacgaaaacaacttatgacatgttcataagttgttttc 779083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 2096008 - 2095960
Alignment:
Q  36 ttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    ||||||||||| ||||||||| |||||||||| ||||| || |||||||    
T  2096008 ttgagagagcttacaaaaacaccttatgatatgtccatgagctgttttc 2095960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 8062547 - 8062503
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    |||||||||||| |||| ||| |||||||||| ||||||||||||    
T  8062547 gatagcttatgagaacatcttatagcttatatgaaaacaatttga 8062503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 30013245 - 30013197
Alignment:
Q  108 acaggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||| |||||    
T  30013245 acaggatagcttatgaaaacagcttatagcttatatggaaacagtttga 30013197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 39551199 - 39551283
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagctt 139  Q
    ||||||||||||| || |||| ||| ||||||  ||||||||| |||| ||||| ||  ||| |||||||||||||||||| ||||||    
T  39551199 aaacaacttatgacatgtccaaaagctgttttt-aacttatttttataagctctcca--ggaaagcttatgaaaacaacttatagctt 39551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 41336692 - 41336736
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    |||||||||||||||||| || ||| |||||| ||||||||||||    
T  41336692 gatagcttatgaaaacaagttctagtttatatgaaaacaatttga 41336736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 42597420 - 42597332
Alignment:
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaat-----ttgagtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||||||||||| ||||||  || ||||||||     || | ||||||||| |||||||||||| |||||| ||||| ||||||    
T  42597420 gcttatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttatacataagtacttat 42597332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 2996689 - 2996552
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||| ||||| ||||| |||||||||||||| |  |||||||||||||| || |||||||| | ||||| |||||||||  ||| ||||| ||   ||||    
T  2996689 ataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttc-aacttattttcatacgctctccaa--gata 2996593  T
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||| || ||||||| ||||||||||||    
T  2996592 gcttatgaaaacaacttataacttatataaaaacaatttga 2996552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 27721830 - 27721765
Alignment:
Q  19 aacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    ||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||| |||||||    
T  27721830 aacacttgtgagattgtttaagagagcttataaaaactacttatgacatatccataagctgttttc 27721765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 23819170 - 23819068
Alignment:
Q  51 aaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaaca 150  Q
    |||||| ||||||| || ||||||||||||||| || |||||||||||| ||||||  || |||||||||||||||||  || || ||||||| ||||||    
T  23819170 aaaacagcttatgacatgtccataagttgtttt-catcttatttctataagctctt--caagatagcttatgaaaacatgttataacttatatgaaaaca 23819074  T
Q  151 atttga 156  Q
     |||||    
T  23819073 gtttga 23819068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 35517177 - 35517230
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||| |||||    
T  35517177 caggatagcttatgaaaacatcttctagcttatataaaaacaatttgattttat 35517230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 30207620 - 30207709
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaatttg----agtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||||||||||||| |||||||||| |||||| ||||    | ||||| ||| ||||||||| |||| |||| ||||||||||||    
T  30207620 tagcttatgaaaacaacttatagcttatatgaaaacagtttgatttattttattttttgttatagaactaacatatacataagcacttat 30207709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 42866093 - 42866047
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||||||||| |||||||||| |||||| |||||    
T  42866093 aggatagcttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 10192310 - 10192257
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||| |||||||||||| || ||||||| |||||||||||| |||||    
T  10192310 caggatagcttttgaaaacaacttataacttatatgaaaacaatttgactttat 10192257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 29263450 - 29263353
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    ||||| |||||||||| | |||||||||||||| | |||||||| | | ||||| ||  |||||||||||||||||||||| | |||||| | |||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttc-agcttatttccacaagctctgca--ggatagcttatgaaaacaacttatcgcttatttgaaaacaa 29263354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 32920444 - 32920497
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||| |||||||||||||||| |||||| ||||||||| |||||| |||||    
T  32920444 caggataacttatgaaaacaacttatagcttctattaaaacgatttgactttat 32920497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 27123312 - 27123394
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctct 105  Q
    |||||||||| |||||||||||||| |   ||||||||||||| || ||  ||||||||||| ||||||||||| ||| |||||    
T  27123312 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgtttt-caacttatttccataagctct 27123394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 47946170 - 47946135
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagc 193  Q
    |||||||| |||||||||||||||||||||||||||    
T  47946170 tttatcttacgttatagaaataacttataaataagc 47946135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 49219162 - 49219083
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttata 186  Q
    ||||| ||||||||||||||| |||||||||| |||| ||||||     | ||||| ||| |||||||||||||||||||    
T  49219162 gatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataacttata 49219083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 19250623 - 19250526
Alignment:
Q  55 caacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaattt 154  Q
    |||||||||| || |||||||| || |||| ||||||||| |||||||||||  || |||| ||||| |||||||||| |||| ||||| |||||| |||    
T  19250623 caacttatgacatgtccataagctgatttc-aacttatttttatatgctctt--caagataacttataaaaacaacttatagc-tatatcaaaacagttt 19250528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 20936218 - 20936320
Alignment:
Q  51 aaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaaca 150  Q
    ||||||||||||||||| | |||||| ||||||| | |||||||| |||  |||| ||  ||||||  |||||||||||| | ||| |||||| ||||||    
T  20936218 aaaacaacttatgatatgttcataagctgttttc-accttatttccataatctctcca--ggatagaatatgaaaacaacctatagattatataaaaaca 20936314  T
Q  151 atttga 156  Q
    ||||||    
T  20936315 atttga 20936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 33534129 - 33534191
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    |||||||||| | |||||||||||| |  ||||||| || ||| |||||||||||||||||||    
T  33534129 acttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttc 33534191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 46110284 - 46110231
Alignment:
Q  51 aaaacaacttatgatatatccataagttgttttccaacttatttctatatgctct 105  Q
    ||||||||||||||||||  ||||||||||||| || |||||||||||| |||||    
T  46110284 aaaacaacttatgatatactcataagttgtttt-cagcttatttctataagctct 46110231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 4191711 - 4191670
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||||| |||||| ||||||||||||    
T  4191711 tttatcttttgttatagaaatagcttatacataagcacttat 4191670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 11802556 - 11802507
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||||||||||| | | || ||||||| |||||    
T  11802556 atagcttatgaaaacaacttgtagcttatgtgagaaaaatttgactttat 11802507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 20907373 - 20907316
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatcttt 166  Q
    ||||||||||| ||||||||  || |||||||||| |||||||||||| || ||||||    
T  20907373 caggatagcttgtgaaaacagtttatagcttatatgaaaacaatttgatttcatcttt 20907316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 28623261 - 28623220
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||| |||||||||||| ||||||||||||    
T  28623261 tttatcttttgttatataaataacttatacataagcacttat 28623220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 35958681 - 35958628
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||||||| ||| |||||||||| |||  ||||||| |||||    
T  35958681 caggatagcttatgaaaacagcttctagcttatataaaacaaatttgactttat 35958628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 40709478 - 40709519
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||| | |||||||||||||||||||    
T  40709478 tttatcttttgttatagaaacagcttataaataagcacttat 40709519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 46176104 - 46176145
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| ||||||||||||||||||  ||||||||||||    
T  46176104 tttatcttttgttatagaaataacttatgtataagcacttat 46176145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 47970290 - 47970249
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||||| |||||| ||||||||||||    
T  47970290 tttatcttttgttatagaaatagcttatacataagcacttat 47970249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 8422886 - 8422972
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaat---ttgagtttatctttcgttatagaaataacttataaataagcac 195  Q
    ||||| || |||||||||||| |||||||||| ||||||||   || | |||||||||  ||||| ||||| |||||| ||||||||    
T  8422886 gatagattgtgaaaacaacttatagcttatatgaaaacaatgactttattttatctttttttataaaaatagcttatacataagcac 8422972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 13949893 - 13949941
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||  ||||||||| |||||||||| |||||||||||| |||||    
T  13949893 tagcttatacaaacaacttatagcttatatgaaaacaatttgactttat 13949941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 18628507 - 18628555
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatga 64  Q
    |||||||||||||||| |||||| ||||||| |  ||||||||||||||    
T  18628507 ataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 24370998 - 24371050
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||||| |||||| | | ||| |||||||| |||||    
T  24370998 aggatagcttatgaaaacaacttatagcttttgtaaaagcaatttgaatttat 24371050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 25717474 - 25717434
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcactta 198  Q
    |||||||||| || ||||||||||||||| |||||||||||    
T  25717474 tttatctttcattctagaaataacttatacataagcactta 25717434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 29778816 - 29778776
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaattt 154  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  29778816 tagcttatgaaaacaacttacagcttatatgaaaacaattt 29778776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 55870390 - 55870438
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||| |||||||| | |||||| ||||| |||||    
T  55870390 tagcttatgaaaacaacttatagcttatgtgaaaacagtttgactttat 55870438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 17269365 - 17269181
Alignment:
Q  17 taaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatag 116  Q
    ||||||||||||||||||||||  || ||| |  |||| | ||||||| || | ||| |||||||||  |||||||| |  || ||||| ||  ||||||    
T  17269365 taaacacttgtgagattgtttggtagtgcttatgaaaataccttatgacatgttcatgagttgttttt-aacttattaccgtaagctctcca--ggatag 17269269  T
Q  117 cttatgaaaacaacttgtagcttatattaaaacaatttgagtttat-----ctttcgttatagaaataacttataaataagcacttat 199  Q
    |||||||||||||||| | |||||||| |||||||||||| |||||     |||| ||| ||||||||||||||| ||||||||||||    
T  17269268 cttatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcacttat 17269181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 30371228 - 30371121
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    |||||||| |||| || |||||||||||||||| | |||||||| ||| ||||| || |  ||  |||||||||||||||| |||||||||| |||||||    
T  30371228 aaacaactaatgacatgtccataagttgttttc-agcttatttcaatacgctctccaaa--atgtcttatgaaaacaacttatagcttatatgaaaacaa 30371132  T
Q  152 tttgagtttat 162  Q
    |||||||||||    
T  30371131 tttgagtttat 30371121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 37241810 - 37241905
Alignment:
Q  51 aaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaa 148  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||  ||| |||||    |||||| |||||||||||||||| |||||||||| ||||    
T  37241810 aaaacaacttatgatatattcataagtttttttccagcttattttcataagctct--ctaggatatcttatgaaaacaacttctagcttatatgaaaa 37241905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 25006081 - 25006131
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttat 25006131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 45205150 - 45205060
Alignment:
Q  50 aaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatat 143  Q
    |||||||||||||||||| ||| |||||||||||| | |||||||| ||   ||||  ||| ||||||||||||||||||||| ||||||||||    
T  45205150 aaaaacaacttatgatatgtccctaagttgttttc-agcttatttccatgaactct--acatgatagcttatgaaaacaacttctagcttatat 45205060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 7218118 - 7218171
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  7218118 caggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttat 7218171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 29045956 - 29046052
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttg------agtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||| |||||||||||||||||| |||||||||| | |||||||||       |||||||||| |||||||||||| |||||| | ||||||||||    
T  29045956 caggacagcttatgaaaacaacttatagcttatatgagaacaatttggctatttgtttatcttttgttatagaaatatcttatacacaagcacttat 29046052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 28467356 - 28467404
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  28467356 tagcttatgaaaacaacttgtagcttatatgaaaataatttgactttat 28467404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 25005841 - 25005888
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  25005841 caggatagcttatgaaaacaacttatagcttatatgaaaacaagttga 25005888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 29007706 - 29007840
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    |||||| ||||||||| | |||||||||||||| | |||||||| ||| ||| |||| ||  ||||  ||||||||||||| |||||||||| |||| |     
T  29007706 aaacaatttatgatatgttcataagttgttttc-agcttatttcgataagcttttcaaag--tagccgatgaaaacaacttatagcttatatgaaaatag 29007802  T
Q  152 tttgagttta-----tctttcgttatagaaataactta 184  Q
    ||||| ||||     ||||| |||||||||||||||||    
T  29007803 tttgactttaatttttcttttgttatagaaataactta 29007840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 5151001 - 5150943
Alignment:
Q  69 tccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaa 129  Q
    |||||||||| |||| ||||||||||||||| ||||||  || ||||||||||||||||||    
T  5151001 tccataagttttttttcaacttatttctataagctctt--catgatagcttatgaaaacaa 5150943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 6110211 - 6110303
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttc--gttatagaaataacttataaataagcacttat 199  Q
    |||||||  ||||||||||||||| || |||| || |||||||||||| ||| | ||||   ||||||||||| |||||| ||||||||||||    
T  6110211 caggataaattatgaaaacaacttataccttaaatgaaaacaatttgaatttgtttttctgtttatagaaatagcttatacataagcacttat 6110303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 13037844 - 13037795
Alignment:
Q  150 aatttgagtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  13037844 aatttgactttatcttttgttatagaaatagcttatacataagcacttat 13037795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 23373267 - 23373375
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||| |||||||||||||||||| ||||||| | | ||||||||||||| || ||||  |  |||||| || ||||||||| || ||||||  |||||||    
T  23373267 ataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgtcca-catctgtttt-cagcttatttctgtaagctctt--caggata 23373362  T
Q  116 gcttatgaaaaca 128  Q
    |||||||||||||    
T  23373363 gcttatgaaaaca 23373375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 27738228 - 27738277
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||| || |||||||||| |||||||||||| |||||    
T  27738228 atagcttatgaaaacaaattatagcttatatgaaaacaatttgactttat 27738277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 49517091 - 49517014
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttata 186  Q
    ||||||||||||||| ||| ||||||| || |||||||||||     | ||||||||| |||||||||||||||||||    
T  49517091 tagcttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttata 49517014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 4033971 - 4034019
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatga 64  Q
    ||||||||||||||||||||||||||||||| |  |||| |||||||||    
T  4033971 ataaacacttgtgagattgtttgagagagcttatgaaaataacttatga 4034019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 12564921 - 12564964
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttg 155  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||    
T  12564921 gatagcttatgaaaacaacttatagcttatatgaaaacagtttg 12564964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 24153389 - 24153330
Alignment:
Q  24 ttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgtttt 83  Q
    |||| |||||||||| ||||||| | | ||||||||||||| |||||||| |||||||||    
T  24153389 ttgtaagattgtttgtgagagcttatagaaacaacttatgacatatccatgagttgtttt 24153330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 40413979 - 40414053
Alignment:
Q  19 aacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttattt 94  Q
    ||||||||| |||||||||| |||| || || ||| ||||| |||| || ||||||||||||||| ||||||||||    
T  40413979 aacacttgtaagattgtttgggagaacttacgaaagcaactgatgaaatgtccataagttgtttt-caacttattt 40414053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 4202226 - 4202268
Alignment:
Q  157 gtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    |||||||||| |||||||||||||||||||  |||||||||||    
T  4202226 gtttatcttttgttatagaaataacttatacttaagcacttat 4202268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 8130459 - 8130409
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||| |||||||| | |||||| ||||| |||||    
T  8130459 gatagcttatgaaaacaacttatagcttatgtgaaaacagtttgactttat 8130409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 25479606 - 25479560
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||||    
T  25479606 aggatagcttatgaaaacaacttatagcctatatgaagacaatttga 25479560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 27963328 - 27963437
Alignment:
Q  20 acacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagctt 119  Q
    ||||| |||| ||||||||||| |||| | |  |||| ||||||| || |||||||||||||||  | ||||||| |||| ||||| || |  |||||||    
T  27963328 acactagtgaaattgtttgagaaagcttatattaacagcttatgacatgtccataagttgtttt-tagcttatttatataagctctccata--atagctt 27963424  T
Q  120 atgaaaacaactt 132  Q
    |||||||||||||    
T  27963425 atgaaaacaactt 27963437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 28482193 - 28482246
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataa 75  Q
    ||||||||||||||| || |||||||| | ||||| |||||||||||| |||||    
T  28482193 acttgtgagattgttcgatagagctcatagaaacatcttatgatatattcataa 28482246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 34179916 - 34179969
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||| |||||||||||  || ||||||| ||||||||||||||| |||||    
T  34179916 caggatagtttatgaaaacagtttatagcttagattaaaacaatttgactttat 34179969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 37818436 - 37818395
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||| | ||||||||||||||||||| ||||||||||||    
T  37818436 tttatctcttgttatagaaataacttatacataagcacttat 37818395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 44115978 - 44116023
Alignment:
Q  138 ttatattaaaacaatttgagtttatctttcgttatagaaataactt 183  Q
    |||||| |||||||||||| ||||||||| |||||| |||||||||    
T  44115978 ttatatgaaaacaatttgactttatcttttgttataaaaataactt 44116023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 5421967 - 5422011
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||    
T  5421967 gatagcttatcaaaacaacttatagcttataagaaaacaatttga 5422011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 5592734 - 5592782
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||| |||||||||| | ||||||| || |||||    
T  5592734 tagcttatgaaaacaacttatagcttatatgacaacaattcgactttat 5592782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 15064825 - 15064857
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttc 84  Q
    |||||||||||||||| ||||||||||||||||    
T  15064825 aaacaacttatgatatgtccataagttgttttc 15064857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 45999387 - 45999431
Alignment:
Q  159 ttatctttcgttatagaaataacttataaataagcacttatgcta 203  Q
    |||||||| |||||||||||| |||||| || |||||||||||||    
T  45999387 ttatcttttgttatagaaatagcttatacatgagcacttatgcta 45999431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 4006738 - 4006641
Alignment:
Q  111 ggatagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttataaataagcacttatgcta 203  Q
    |||||||||||||||||||||| |||||||||| |||||||||||     | |||||| || |||||||||||| |||||  ||||||||||||||||    
T  4006738 ggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttatgcta 4006641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 2727901 - 2727995
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttga-----gtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||||||||||||||||| |||||||||| || |||||||||     |||||||||| |||||||||  | |||||| ||||||||||||    
T  2727901 aggatagcttatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatagaagcagcttatacataagcacttat 2727995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 33558532 - 33558677
Alignment:
Q  50 aaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaac 149  Q
    |||| ||||| ||| ||||| |||||||| ||||||| |||||||| ||| |||| | | ||||||||||||||||| ||||| |  ||| ||| |||||    
T  33558532 aaaagcaactaatgttatattcataagttattttccagcttatttccataagctcatta-aggatagcttatgaaaaaaacttatttctt-tatgaaaac 33558629  T
Q  150 aatttgagtttatctttcgttatagaaataacttataaataagcacttatgc 201  Q
    | ||||| ||||    | ||||||||||||| ||||||||||||| ||||||    
T  33558630 agtttgacttta----ttgttatagaaataatttataaataagcatttatgc 33558677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 4246490 - 4246395
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaaca 150  Q
    |||||||| |||| || |||||||| ||||||| ||||||||| |||||||||| || |  |||||||||||||||| ||| ||| |||||| ||||||    
T  4246490 aaacaactcatgacatgtccataagctgttttc-aacttatttttatatgctctccata--atagcttatgaaaacagcttatagattatatgaaaaca 4246395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 32143659 - 32143737
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttattt 94  Q
    |||||||| ||||||| ||||| | | | || | ||||| || |||||||||||| |||||||||||||||||||||||    
T  32143659 ataaacacatgtgagactgtttaaaataacttataaaaataagttatgatatatcaataagttgttttccaacttattt 32143737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 32577940 - 32578042
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    ||||| ||||| || |||||||||||||||| |  |||||||||||||| || ||| | || |||||| || |||||||| ||||||||||  |||||||    
T  32577940 ataaatacttgggacattgtttgagagagcttatgaaaacaacttatgacatgtccttgagctgtttt-cagcttatttccatatgctctt--caggata 32578036  T
Q  116 gcttat 121  Q
    ||||||    
T  32578037 gcttat 32578042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 281808 - 281945
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttat 121  Q
    |||||||||| |||||| ||||||| |   || |||||||||| || || ||||||||||||| | |||||||| ||  |||||  |  |||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttc-agcttatttccatgagctctcta--ggatagcttat 281904  T
Q  122 gaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||| ||| ||| |||||||||| ||||||| |||| |||||    
T  281905 gaacacagcttatagcttatatgaaaacaagttgactttat 281945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 33500438 - 33500612
Alignment:
Q  20 acacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagctt 119  Q
    ||||| |||||| |||||||| ||||| |  ||||||| |||||| || | ||||||||||||| | ||||||||| ||| | |||  ||| ||||||||    
T  33500438 acactcgtgagactgtttgagggagcttatgaaaacaatttatgacatgtgcataagttgtttttcgacttatttccataagttct--acatgatagctt 33500535  T
Q  120 atgaaaacaacttgtagcttatattaaaaca-----atttgagtttatctttcgttatagaaataacttataaataa 191  Q
      | ||||| ||| || |||||||| |||||     |||| | ||||||||| |||||||||||| |||||| ||||    
T  33500536 gcggaaacagcttataacttatattgaaacagtttgattttactttatcttttgttatagaaatagcttatacataa 33500612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 25100091 - 25100022
Alignment:
Q  85 caacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||| |||||| |   ||||||||||||||||||||| || ||| ||| ||||||||||||    
T  25100091 caacttatttctataagctctttaa--gatagcttatgaaaacaacttataacttctatgaaaacaatttga 25100022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 2460111 - 2460193
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctct 105  Q
    |||||||||| |||||||||||||| |   ||||||||||||| || ||  ||||||||||| ||||||||||| ||| |||||    
T  2460111 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgtttt-caacttatttccataagctct 2460193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 32917243 - 32917157
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||  ||||||||||||| |||||||||| ||   ||||| | ||||||||| | ||| |||||| |||||| ||||||||||||    
T  32917243 aggatagcagatgaaaacaacttatagcttatatgaa---aattttattttatcttttgctattgaaatagcttatacataagcacttat 32917157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 32976004 - 32975909
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    |||||||||||||||||||||||| | |||| |||| ||||| ||||     | ||||| ||| |||| |||||||||||||| |||| |||||||    
T  32976004 caggatagcttatgaaaacaacttattgcttctattgaaacagtttgactttattttatattttgttacagaaataacttatacataaacacttat 32975909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 6647410 - 6647323
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatc---tttcgttatagaaataacttataaataagcact 196  Q
    |||||||||||||||||  || || | |||||||||  ||||||| |||||    ||| ||||||||||||||||||| |||||||||    
T  6647410 gatagcttatgaaaacagattataacctatattaaagtaatttgactttattattttttgttatagaaataacttatacataagcact 6647323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 31461650 - 31461609
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||||| |||||| ||||||||||||    
T  31461650 tttatcttttgttatagaaatagcttatacataagcacttat 31461609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 32917314 - 32917253
Alignment:
Q  15 aataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataag 76  Q
    ||||||||||||||||| |||||| ||||||| |   ||||||||||||| || ||||||||    
T  32917314 aataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataag 32917253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 33068659 - 33068700
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||    
T  33068659 tttatcttttgttatagaaataacttatacataagcatttat 33068700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 4247732 - 4247772
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcactta 198  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  4247732 tttatcttttgttatagaaatagcttatacataagcactta 4247772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 8035193 - 8035233
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaaca 150  Q
    |||||| |||||||||||||||| |||||||||| ||||||    
T  8035193 aggataacttatgaaaacaacttctagcttatatgaaaaca 8035233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 10031848 - 10031780
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    |||| ||||||||||| ||||||| |||||  |  ||| ||||||| || |||||||||||||||||||    
T  10031848 ataagcacttgtgagactgtttgaaagagcctatgaaaccaacttacgacatatccataagttgttttc 10031780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 19800481 - 19800568
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcactta 198  Q
    ||||||||||||| ||| ||||| |||||||||  ||| || ||| | |||||||||  | ||||||||||||| || |||||||||||    
T  19800481 aggatagcttatgtaaaaaacttatagcttata-caaatcagttttattttatcttttatcatagaaataacttgtacataagcactta 19800568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 30863362 - 30863271
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttca 108  Q
    |||||||||||| ||| | ||||  |||||| |  |||||||||||||| || | ||||||||||||| || |||| ||||||| ||||||||    
T  30863362 ataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgtacataagttgtttt-cagcttacttctataagctcttca 30863271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 33887941 - 33887805
Alignment:
Q  21 cacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagctta 120  Q
    ||||||||| |||||||||||||  | |  |||| | ||||||| || | || ||||||||||| |||||||||| ||| ||  ||||  ||||||||||    
T  33887941 cacttgtgacattgtttgagagaatttatgaaaatagcttatgacatgttcacaagttgttttc-aacttatttccataagcatttca--ggatagctta 33887845  T
Q  121 tgaaaacaacttgtagcttatattaaaacaatttgagttt 160  Q
    ||||||||  || | | ||||| ||||||| |||||||||    
T  33887844 tgaaaacagtttattgattatactaaaacagtttgagttt 33887805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 35486027 - 35485910
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttat 121  Q
    |||||||||| ||||||||||| || || ||| ||||||||||||| | |||||| |||||| || || ||||| ||| ||||||  |||||||||||||    
T  35486027 acttgtgagactgtttgagagaacttactaaagcaacttatgatatgttcataagctgtttt-cagctcatttccataggctctt--caggatagcttat 35485931  T
Q  122 gaaaacaacttgtagcttata 142  Q
     |||||||||| |||||||||    
T  35485930 aaaaacaacttatagcttata 35485910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 10143195 - 10143103
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtt-----tatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||     ||||||| ||||||||||||||||||| ||||||||||||    
T  10143195 gatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 17952745 - 17952840
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    |||||||||||||||||||| |||||||||||||| |||| | ||||     | ||||||||| |||||||||||| |||||| |||||| |||||    
T  17952745 caggatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttat 17952840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 28803550 - 28803645
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    |||||||| ||| |||||||||||||||||||||| ||| || ||||     | ||||||||| ||||| ||||||||||||| ||||||||||||    
T  28803550 caggatagtttaagaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttat 28803645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 11513921 - 11513871
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttat 11513871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 43141951 - 43141845
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    ||||||||||||| ||  ||||||||||||||| |  ||||||| |||  |||||||  |||||||||||||||||| ||| ||||||||||  ||||||    
T  43141951 aaacaacttatgacatgcccataagttgttttc-attttatttccataaactcttca--ggatagcttatgaaaacatcttatagcttatatggaaacaa 43141855  T
Q  152 tttgagttta 161  Q
    ||||| ||||    
T  43141854 tttgacttta 43141845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 5043607 - 5043657
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||| |||||    
T  5043607 gatagcttatgaaaacaacttctagcttatatgaaaacagtttgactttat 5043657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 30990421 - 30990506
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcactt 197  Q
    |||| |||||||||||| ||| |||||||||  ||||||| || | |||||| || |||||||||| | |||||| ||||||||||    
T  30990421 gatatcttatgaaaacagcttatagcttatacaaaaacaactttattttatcatttgttatagaaagagcttatacataagcactt 30990506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 41033019 - 41033088
Alignment:
Q  130 cttgtagcttatattaaaacaatttgagttt-atctttcgttatagaaataacttataaataagcactta 198  Q
    |||||||||||| | |||||||||| | ||| |||||| |||||||||||| |||||| |||||||||||    
T  41033019 cttgtagcttatgtaaaaacaattttatttttatcttttgttatagaaatagcttatacataagcactta 41033088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 7937044 - 7936956
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcacttatg 200  Q
    ||||||||||||||||| ||| ||   ||||| ||||||||||   ||||||||| |||||||||||   ||||| |||||||||||||    
T  7937044 gatagcttatgaaaacagcttataatctatatgaaaacaattttcttttatcttttgttatagaaatggtttatacataagcacttatg 7936956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 13234622 - 13234554
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    |||| ||||||| ||| |||||||||| ||| |||||||||  |||||| || ||||||||||||||||    
T  13234622 ataagcacttgtaagactgtttgagagtgcttacaaaaacacattatgacatgtccataagttgttttc 13234554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 44269082 - 44269014
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    |||||||||||| |||  ||||  ||||||| ||||||||||||||||| || ||||||| ||||||||    
T  44269082 ataaacacttgtaagaccgttttggagagcttacaaaaacaacttatgacatgtccataaattgttttc 44269014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 39983368 - 39983329
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaa 148  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  39983368 caggatagcttatgaaaacaacttatagcttatatgaaaa 39983329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 43985325 - 43985190
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||||||||||| | | |||||||||||| | ||  ||||||||||||| || |||||||| | |||| |||||| |||| ||| |||||||||  | ||    
T  43985325 ataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagct-tttttcaacttgtttccataagctcttcac--ggta 43985229  T
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaattt 154  Q
    |||||  ||||||| || ||||||| | || ||||||||    
T  43985228 gcttacaaaaacaaattatagcttacactataacaattt 43985190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 15780122 - 15780063
Alignment:
Q  88 cttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaac 149  Q
    |||||||||||| ||||| |||  ||||||||||||||||||||| ||| |||||| |||||    
T  15780122 cttatttctataagctctgcac--gatagcttatgaaaacaacttatagattatatgaaaac 15780063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 18066151 - 18066109
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaattt 154  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||    
T  18066151 gatagcttatgaaaacagcttatagcttatatgaaaacaattt 18066109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 25800852 - 25800810
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaattt 154  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||    
T  25800852 gatagcttatgaaaacagcttatagcttatatgaaaacaattt 25800810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 43065439 - 43065517
Alignment:
Q  51 aaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaactt 132  Q
    |||||||||||||| || ||||||| ||||||| || |||||||| ||| ||||| |||  |||| ||||||||||||||||    
T  43065439 aaaacaacttatgacatgtccataaattgtttt-cagcttatttcaataagctctccac--gataacttatgaaaacaactt 43065517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 22681230 - 22681275
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttg 155  Q
    ||||||| ||||||||||| ||| |||||||||| |||||||||||    
T  22681230 aggatagattatgaaaacagcttatagcttatatgaaaacaatttg 22681275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 32821889 - 32821816
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaaca 128  Q
    ||||||||||||| || |||||||| |||||| ||  ||||||||||| ||||||   |||||||||||||||||||    
T  32821889 aaacaacttatgacatgtccataagctgtttt-cagtttatttctataagctctt--taggatagcttatgaaaaca 32821816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 34651996 - 34652097
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttat 121  Q
    ||||||||||  ||| |||| |||| | | ||||||||||||| || |||||||| |||||| ||||||||||| ||| |||||   || ||||||||||    
T  34651996 acttgtgagacggttggagaaagcttatagaaacaacttatgacatgtccataagctgtttt-caacttatttccataagctct--ccaagatagcttat 34652092  T
Q  122 gaaaa 126  Q
    |||||    
T  34652093 gaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 35755554 - 35755599
Alignment:
Q  117 cttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||| ||||||| || |||||||||||| |||||    
T  35755554 cttatgaaaacaacttatagcttacatgaaaacaatttgactttat 35755599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 38077027 - 38077115
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctct 105  Q
    |||||||||||||||||||||||||||| ||    ||||||||||| || || ||||||||  ||||| || | |||||||||| |||||    
T  38077027 ataaacacttgtgagattgtttgagagaacttcttaaaacaacttacgacatttccataagaggtttt-cagcctatttctataagctct 38077115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 41039695 - 41039784
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcactta 198  Q
    ||||||| ||||||||||   ||  |||||||||| ||| |||||| | ||||||||| || | ||||||| |||||| |||||||||||    
T  41039695 caggataacttatgaaaatcgctcatagcttatataaaagcaattttattttatcttttgtcacagaaatagcttatacataagcactta 41039784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 1939323 - 1939395
Alignment:
Q  53 aacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaaca 128  Q
    |||||||||||| || |||||||| |||||| ||||||||||| ||| |||||   ||| ||||||||||||||||    
T  1939323 aacaacttatgacatgtccataagctgtttt-caacttatttccataagctct--ccagtatagcttatgaaaaca 1939395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 7283076 - 7283044
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttc 84  Q
    |||||||||||||||| ||||||||||||||||    
T  7283076 aaacaacttatgatatgtccataagttgttttc 7283044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 34926988 - 34926956
Alignment:
Q  111 ggatagcttatgaaaacaacttgtagcttatat 143  Q
    |||||||||||||||||||||| ||||||||||    
T  34926988 ggatagcttatgaaaacaacttatagcttatat 34926956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 24281163 - 24281095
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    |||| |||||||| ||||||||||||||||| |  ||||||||||||||||| ||||||||||||||||    
T  24281163 ataagcacttgtgtgattgtttgagagagcttatgaaaacaacttatgatatctccataagttgttttc 24281095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 27792932 - 27792803
Alignment:
Q  72 ataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatcttt 166  Q
    ||||||||||||| | |||||||||||| |||||  ||| ||||| |||||||||||||||| ||||||||| |||| | ||||     | |||||||||    
T  27792932 ataagttgttttc-agcttatttctataagctct--acatgatagtttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttt 27792836  T
Q  167 cgttatagaaataacttataaataagcacttat 199  Q
     ||| | |||||| |||||| ||||||||||||    
T  27792835 tgtttttgaaatagcttatacataagcacttat 27792803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 1810093 - 1809981
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||| ||||||||||| | |||||||||||| ||  ||||||||||||| || ||||| ||||||||| |  |||||||||||| |   |||  ||||||    
T  1810093 ataatcacttgtgagactatttgagagagcttacggaaacaacttatgacatgtccatgagttgtttt-ctgcttatttctataag--tttcgtaggata 1809997  T
Q  116 gcttatgaaaacaact 131  Q
    ||||||||||||||||    
T  1809996 gcttatgaaaacaact 1809981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 27294462 - 27294287
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||| ||||||||||| |||||||||||||||| | |||||||| |||||||   |||||| |||||| || ||||||||  |||| |||  ||| || |    
T  27294462 ataagcacttgtgagactgtttgagagagctcatagaaacaactcatgatatgctcataagctgtttt-catcttatttccttatgatct--acatgaca 27294366  T
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    | ||||||||||| ||| |||||||||  | ||| ||     ||||||||| |||||||||  |||||||  ||||||||||||    
T  27294365 gtttatgaaaacagcttatagcttatacaataactat-----tttatcttttgttatagaagaaacttatgcataagcacttat 27294287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 14548680 - 14548852
Alignment:
Q  21 cacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagctta 120  Q
    ||||||||||| |||||||||||||| |  |||||||| ||||| || |  ||| | ||||||| | |||||||| ||| ||||| || |  ||| ||||    
T  14548680 cacttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttc-agcttatttccataagctctccaga--ataactta 14548776  T
Q  121 tgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcactta 198  Q
    |||||||||||| |||||||||| |||||  ||||| || |  |||  ||||||||||||||| || || ||||||||    
T  14548777 tgaaaacaacttatagcttatatgaaaactttttgatttga--ttttattatagaaataacttttacattagcactta 14548852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 21872315 - 21872362
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||    
T  21872315 caggatagcttatgaaaacaacttatagcttatatcaaaaaaatttga 21872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 24235731 - 24235809
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttgagt-----ttatctttcgttatagaaataacttata 186  Q
    |||||||||||||||||||| ||||||||||| ||| | ||||| |     |||||||| |||||||||||||||||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataacttata 24235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 25182947 - 25183001
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataag 76  Q
    |||||||||| |||||||||||||| |  |||||||||||||| |||||||||||    
T  25182947 acttgtgagactgtttgagagagcttatgaaaacaacttatgacatatccataag 25183001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 53848109 - 53848197
Alignment:
Q  111 ggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatct--ttcgttatagaaataacttataaataagcactta 198  Q
    |||||| ||||||||| |||| ||||||||||| |||||||||||| ||||| |  || ||| |||||||||||||||  ||||||||||    
T  53848109 ggatagtttatgaaaataact-gtagcttatatcaaaacaatttgactttattttctttgttgtagaaataacttatatgtaagcactta 53848197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 16790186 - 16790227
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  16790186 tttatcttttgttatagaaataacttatatataagcacttat 16790227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 28306180 - 28306131
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||| |||||    
T  28306180 atagcttatgaaaacaacttgtaacttatatgaaaacagtttgactttat 28306131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 37273250 - 37273141
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||| |||| |||||| |||||| ||||||| |   ||||||||||||| || ||||||||||||||| ||||||||||| ||| | |||   || ||||    
T  37273250 ataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgtttt-caacttatttccataagttct--ccaagata 37273154  T
Q  116 gcttatgaaaaca 128  Q
    |||||||||||||    
T  37273153 gcttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 41057060 - 41057007
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatcttt 166  Q
    |||||||||||||||||||| |||||||||| ||||||| || | |||||||||    
T  41057060 atagcttatgaaaacaacttatagcttatatgaaaacaaattaattttatcttt 41057007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 43875581 - 43875513
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttc 84  Q
    |||| ||||||||||||||| |||||  ||| | | |||||||||||||||  ||||||||||||||||    
T  43875581 ataagcacttgtgagattgtctgagaatgcttatagaaacaacttatgatacgtccataagttgttttc 43875513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 43115172 - 43115048
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||| ||||||||||||||||||  |||| | |   ||||||||||||| || ||||||| ||||||| || |||||||| ||| |||| ||| | ||||    
T  43115172 ataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgtttt-cagcttatttccataagctc-tca-atgata 43115076  T
Q  116 gcttatgaaaacaacttgtagcttatat 143  Q
    | | ||||||||||||| ||||||||||    
T  43115075 gttcatgaaaacaacttatagcttatat 43115048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 2318703 - 2318623
Alignment:
Q  74 aagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||| | |||||||||||| ||||| || || ||| ||||| |||||||||| ||| |||||| ||||||||||||    
T  2318703 aagttgttttc-agcttatttctataagctctcca-agaataacttataaaaacaacttatagtttatatgaaaacaatttga 2318623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 10101527 - 10101601
Alignment:
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaat-----ttgagtttatctttcgttatagaaataacttat 185  Q
    ||||||||||||||||| || ||||||| ||||||||     || | ||||||||| ||||||||||||||||||    
T  10101527 gcttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 10132769 - 10132807
Alignment:
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaattt 154  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  10132769 gcttatgaaaacaacttgtatcttatataaaaacaattt 10132807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 10212452 - 10212526
Alignment:
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaat-----ttgagtttatctttcgttatagaaataacttat 185  Q
    ||||||||||||||||| || ||||||| ||||||||     || | ||||||||| ||||||||||||||||||    
T  10212452 gcttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 20173986 - 20174027
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||    
T  20173986 tttatcttttgttatagaaataactaatacataagcacttat 20174027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 22214704 - 22214745
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    ||||||||||||||||||||||| ||| |||||| |||||||    
T  22214704 aggatagcttatgaaaacaacttataggttatatgaaaacaa 22214745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 24887327 - 24887380
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||||||| ||| |||||||||| || ||| ||||| |||||    
T  24887327 caggatagcttatgaaaacagcttttagcttatatgaatacagtttgactttat 24887380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 25447624 - 25447575
Alignment:
Q  50 aaaaacaacttatgatatatccataagttgttttccaacttatttctata 99  Q
    ||||||||||||  |||| |||||||||| |||| |||||||||||||||    
T  25447624 aaaaacaacttaccatatgtccataagttatttttcaacttatttctata 25447575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 33674707 - 33674796
Alignment:
Q  115 agcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatct-ttcgttatagaaataacttataaataagcacttatgcta 203  Q
    |||||||||||||| ||| ||| ||||||  ||| ||||| | ||| | | || |||||||||||| ||||||||||||| |||||||||    
T  33674707 agcttatgaaaacagcttatagtttatatgcaaaaaatttaactttttttgtttgttatagaaatagcttataaataagcgcttatgcta 33674796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 39885563 - 39885522
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    |||||||||||||||||||||||| | |||||||| ||||||    
T  39885563 aggatagcttatgaaaacaacttgcaacttatattgaaacaa 39885522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 41159081 - 41159040
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||    
T  41159081 tttatctttagttataggaataacttatacataagcacttat 41159040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 659820 - 659880
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttt 82  Q
    |||||||||| |||||| ||||||| | | ||||| ||||||| || ||||||||||||||    
T  659820 acttgtgagactgtttgtgagagctaatagaaacagcttatgacatgtccataagttgttt 659880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 1395750 - 1395710
Alignment:
Q  21 cacttgtgagattgtttgagagagctcacaaaaacaactta 61  Q
    |||||| |||| |||||||||||||| ||||||||||||||    
T  1395750 cacttgcgagactgtttgagagagcttacaaaaacaactta 1395710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 23249581 - 23249537
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||||||| || ||||||| |||||| |||||    
T  23249581 gatagcttatgaaaacaacttatatcttatataaaaacagtttga 23249537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 43875671 - 43875627
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||||||| |||||||||| | |||| |||||    
T  43875671 gatagcttatgaaaacaacttatagcttatatgagaacagtttga 43875627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 27599 - 27508
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttataaataagcactta 198  Q
    ||||| ||||||||||||||| ||| |||||| |||||||||||     | ||||||||  ||||||||||||||||||| |||||||||||    
T  27599 gatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcactta 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 24909682 - 24909603
Alignment:
Q  117 cttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcact 196  Q
    |||||||||||||||| |||||||||| |||| ||||||| ||||  ||| |||| ||||||| |||||| |||||||||    
T  24909682 cttatgaaaacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcact 24909603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 28165152 - 28165023
Alignment:
Q  71 cataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtt-----tatctt 165  Q
    |||||| ||||||| |||||||||| ||| ||||| ||   |||||||||| || |||  || ||||||||||||||||||||||| ||     ||||||    
T  28165152 cataagctgttttc-aacttatttccataagctctccat--gatagcttataaagacagtttatagcttatattaaaacaatttgacttcattttatctt 28165056  T
Q  166 tcgttatagaaataacttataaataagcactta 198  Q
    | |||||||||| |||||||| |||||||||||    
T  28165055 ttgttatagaaagaacttatacataagcactta 28165023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 2013206 - 2013130
Alignment:
Q  123 aaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||| || ||| ||||| | ||||||||||| ||||||||| ||||||||||||| ||||| ||||||| ||||    
T  2013206 aaaacaatttatagtttatagttaaacaatttgattttatcttttgttatagaaataaattatacataagcatttat 2013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 4966266 - 4966142
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttat 121  Q
    |||||||||| |||||  ||||||| | | |||| ||||||||||| ||||||||||||||| ||  ||||||| ||| ||||||  |||||| ||||||    
T  4966266 acttgtgagactgtttaggagagcttatagaaaccacttatgatatgtccataagttgtttt-cagtttatttccataagctctt--caggatggcttat 4966170  T
Q  122 gaaaacaacttgtagcttatattaaaac 149  Q
    ||||||| ||| || || |||| |||||    
T  4966169 gaaaacagcttatacctaatatgaaaac 4966142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 47046153 - 47046205
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||| |||||    
T  47046153 aggatagcttatgaaaacaactcggagcttatatgaaaacaatttgactttat 47046205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 36538024 - 36537957
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgtttt 83  Q
    |||||||||||||||||||||||||||| || |   ||||||||||||| || | |||||||||||||    
T  36538024 ataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgtttt 36537957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 48157082 - 48157209
Alignment:
Q  24 ttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatga 123  Q
    |||||||| |||||| ||||||| | | ||||||||||||  || |||||||| ||||||| | |||||||| ||| | ||| |  |  ||||||| |||    
T  48157082 ttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttc-agcttatttccataagatctcccga--atagcttgtga 48157178  T
Q  124 aaacaacttgtagcttatattaaaacaattt 154  Q
    |||||| || |||||||||||||||||||||    
T  48157179 aaacaaattatagcttatattaaaacaattt 48157209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 33894743 - 33894555
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggata 115  Q
    |||| ||||||||||| |||||| ||||||| |  |||||| | ||||| || |||||||||||||||| | |||||||| |||  || ||| |||||||    
T  33894743 ataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttc-agcttatttcaataaact-ttc-caggata 33894647  T
Q  116 gcttatg-----aaaacaacttgtagcttatattaaaacaatttgagtt----tatctttcgttatagaaataacttataaataagcactta 198  Q
    ||||| |     |||||||| |  ||||||||| |||||| ||||| ||    ||||||| |||||||||||| |||||| |||||||||||    
T  33894646 gcttaagttgtaaaaacaacataaagcttatatgaaaacagtttgacttattttatcttttgttatagaaatagcttatacataagcactta 33894555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 1417285 - 1417237
Alignment:
Q  114 tagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||| | |||||||| |||||||||||| |||||    
T  1417285 tagcttatgaaaacaacttattgcttatatgaaaacaatttgactttat 1417237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 45813236 - 45813323
Alignment:
Q  121 tgaaaacaacttgtagcttatattaaaacaatttgagtttat-----ctttcgttatagaaataacttataaataagcacttatgcta 203  Q
    |||||||||||| ||| |||||| ||||||| |||| |||||     |||| | |||||||||| ||||||||||||||| |||||||    
T  45813236 tgaaaacaacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatagcttataaataagcacctatgcta 45813323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 12110383 - 12110333
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||| ||| |||||||||  |||||||||||| |||||    
T  12110383 gatagcttatgaaaacagcttatagcttataccaaaacaatttgactttat 12110333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 28340889 - 28340935
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||||| ||| |||||||||| | ||||||||||    
T  28340889 aggatagcttatgaaaacagcttatagcttatatgacaacaatttga 28340935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 34754766 - 34754905
Alignment:
Q  18 aaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagc 117  Q
    |||||||| ||||| |||||||||||||| |  |||||| ||||||| |   | |||||||||||| || |||||||| ||  |||||   ||||||||     
T  34754766 aaacacttatgagactgtttgagagagcttaagaaaacatcttatgacaagcctataagttgtttt-cagcttatttccatcagctct---caggatagt 34754861  T
Q  118 ttatgaaaacaacttgtagcttatattaaaacaatttgagttta 161  Q
    |||||||||||||||   |||||||| || ||| ||||| ||||    
T  34754862 ttatgaaaacaacttacggcttatatgaagacattttgacttta 34754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 35007600 - 35007543
Alignment:
Q  134 tagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataa 191  Q
    ||||||| || |||||||||| | ||||||||| |||||||||||| |||||| ||||    
T  35007600 tagcttacatgaaaacaattttattttatctttagttatagaaatagcttatacataa 35007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 38010739 - 38010694
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttg 155  Q
    ||||||| ||||||||||| ||| |||||||||| |||||||||||    
T  38010739 aggatagattatgaaaacagcttatagcttatatgaaaacaatttg 38010694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 39771847 - 39771799
Alignment:
Q  46 tcacaaaaacaacttatgatatatccataagttgttttccaacttatttc 95  Q
    ||||| |||||||||||||||| |||||||| |||||| |||||||||||    
T  39771847 tcacataaacaacttatgatatgtccataagctgtttt-caacttatttc 39771799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 44151436 - 44151558
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaa----cttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagc 117  Q
    |||||||||||| |||||||||||| |  |||||||     |||||| || |||||||| |||||| || |||||||| ||| ||| ||  || |||||     
T  44151436 acttgtgagattatttgagagagcttatgaaaacaatttttttatgacatgtccataagatgtttt-cagcttatttccataagctttt--caagatagt 44151532  T
Q  118 ttatgaaaacaacttgtagcttatat 143  Q
    ||||||||||||||| ||||||||||    
T  44151533 ttatgaaaacaacttatagcttatat 44151558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 6263358 - 6263452
Alignment:
Q  56 aacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaattt 154  Q
    ||||||||| || |||||||||||||||  | |||||||| ||||||||| || |  ||||||||||||| || ||| || ||||||| ||||| ||||    
T  6263358 aacttatgagatgtccataagttgtttt--agcttatttccatatgctctccata--atagcttatgaaatcagcttataacttatatgaaaaccattt 6263452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 40439101 - 40439036
Alignment:
Q  86 aacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaatt 153  Q
    |||||||||| ||| ||||||||  |||||||| ||||||||||||| || | ||||| |||||||||    
T  40439101 aacttatttccataagctcttca--ggatagctaatgaaaacaacttataacatatatgaaaacaatt 40439036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 40530454 - 40530542
Alignment:
Q  110 aggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcactta 198  Q
    |||||||||||| |||||||||| |||||| | | |||||||| ||  ||||| ||| || | | ||||| |||||| |||||||||||    
T  40530454 aggatagcttattaaaacaacttatagcttttgtaaaaacaatctgtctttatgttttgtcacacaaatagcttatacataagcactta 40530542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 18704084 - 18704174
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttga----gtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    |||||||||||||||||||| |||||||||| |||| |  ||||     ||||||||| ||||||||||||||||||| ||||| ||||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaatagcttgactttatttatcttttgttatagaaataacttatacataagaacttat 18704174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 34205321 - 34205213
Alignment:
Q  52 aaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    ||||||||||||  || | ||||||||||||||  | ||||||| ||| ||| ||  || ||||||||||||||||||||| |||||||||| |||| ||    
T  34205321 aaacaacttatgtcatgttcataagttgttttcacatttatttccataagcttttt-caagatagcttatgaaaacaacttatagcttatataaaaataa 34205223  T
Q  152 tttgagttta 161  Q
    ||||| ||||    
T  34205222 tttgacttta 34205213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 14295611 - 14295479
Alignment:
Q  27 tgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaa 126  Q
    ||||| ||| |||||||||| |  |||||| |||||||||| || ||||| ||||||| | |||| ||||| | ||||| ||  |||||||||| |||||    
T  14295611 tgagactgtctgagagagcttatgaaaacagcttatgatatgtcgataagctgttttc-agcttacttctaaaagctctcca--ggatagcttacgaaaa 14295515  T
Q  127 caacttgtagcttatattaaaacaatttgagtttat 162  Q
    || ||| |||||||||| |||||| ||||| |||||    
T  14295514 cagcttatagcttatatgaaaacagtttgactttat 14295479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 26209460 - 26209546
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatatt-aaaacaatttgagtttatctt---tcgttatagaaataacttataaataagca 194  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||| || ||||| ||   | ||||||||||||||||||| |||||||    
T  26209460 gatagcttatgaaaacagcttatagcttatattgaaaacaattggactttattttatcttgttatagaaataacttatacataagca 26209546  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 5559748 - 5559661
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||| | || ||||||   ||||||||||||| ||| | |||| |||||    
T  5559748 gatagctaatgaaaacaacttatagcttatactaaaacaatttaatttaatcttttactatagaaataactcatacacaagcgcttat 5559661  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 19138726 - 19138816
Alignment:
Q  71 cataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||| |||||||| | |||||||| ||| ||||| || |  |||||||||||||||||||| |||||||| | |||||||||||| |||||    
T  19138726 cataaattgttttc-agcttatttccataagctctccatataatagcttatgaaaacaacttatagcttatctgaaaacaatttgaatttat 19138816  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 37588322 - 37588483
Alignment:
Q  24 ttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatga 123  Q
    |||||||| |||||||||||||| |  || ||||| ||||| || |  ||||| ||||||| | |||||||| ||| ||||| || |  ||| |||||||    
T  37588322 ttgtgagactgtttgagagagcttatgaatacaacctatgaaatgttaataagctgttttc-agcttatttccataagctctccaga--ataacttatga 37588418  T
Q  124 aaacaacttgtagcttatattaaaac-----aatttgagtttatctttcgttatagaaataactt 183  Q
    ||||||||| |||||||||| |||||      |||||| |||||||||  |||||||||||||||    
T  37588419 aaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaataactt 37588483  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 37611175 - 37611279
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttat 121  Q
    ||||||||||||||||||||||||| |  |||||||||| ||| || | |||||| ||||||| |  ||||||| ||| ||||| ||   ||||||||||    
T  37611175 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttc-aggttatttccataagctctccaa--gatagcttat 37611271  T
Q  122 gaaaacaa 129  Q
    ||||||||    
T  37611272 gaaaacaa 37611279  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 37787905 - 37788009
Alignment:
Q  22 acttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttat 121  Q
    ||||||||||||||||||||||||| |  |||||||||| ||| || | |||||| ||||||| |  ||||||| ||| ||||| ||   ||||||||||    
T  37787905 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttc-aggttatttccataagctctccaa--gatagcttat 37788001  T
Q  122 gaaaacaa 129  Q
    ||||||||    
T  37788002 gaaaacaa 37788009  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 12975370 - 12975320
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||| ||| ||| |||||||||| |||||||||||| |||||    
T  12975370 gatagcttatgaacacagcttatagcttatatgaaaacaatttgattttat 12975320  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 16889757 - 16889671
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttg-----agtttatctttcgttatagaaataacttataaataagca 194  Q
    |||||||||||||||| ||| |||||| ||| |||||| ||||     ||||||||||| ||||| |||||| |||||| |||||||    
T  16889757 atagcttatgaaaacagcttatagcttctataaaaacagtttgacttaagtttatcttttgttatggaaatagcttatacataagca 16889671  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 18543240 - 18543282
Alignment:
Q  109 caggatagcttatgaaaacaacttgtagcttatattaaaacaa 151  Q
    |||||||||||||||||||||||| || ||||||| |||||||    
T  18543240 caggatagcttatgaaaacaacttatatcttatataaaaacaa 18543282  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 34245747 - 34245709
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaaca 150  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  34245747 gatagcttataaaaacaacttatagcttatattaaaaca 34245709  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 41277397 - 41277447
Alignment:
Q  112 gatagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    ||||||||||||||||||||| || ||||||| |||||| ||||| |||||    
T  41277397 gatagcttatgaaaacaacttttaacttatatgaaaacagtttgactttat 41277447  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 6587155 - 6587204
Alignment:
Q  113 atagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttat 162  Q
    |||||||||||||||||||| |||||||||  |||||||||  |||||||    
T  6587155 atagcttatgaaaacaacttatagcttatacgaaaacaattgaagtttat 6587204  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 40048378 - 40048419
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||| |||||||| ||||||||||||    
T  40048378 tttatcttttgttatagaaacaacttatacataagcacttat 40048419  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 5531115 - 5531083
Alignment:
Q  51 aaaacaacttatgatatatccataagttgtttt 83  Q
    ||||||||||||||||| |||||||||||||||    
T  5531115 aaaacaacttatgatatgtccataagttgtttt 5531083  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 10272482 - 10272522
Alignment:
Q  116 gcttatgaaaacaacttgtagcttatattaaaacaatttga 156  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  10272482 gcttatgaaaacaacttatagcttatacgaaaacaatttga 10272522  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 19177104 - 19177044
Alignment:
Q  16 ataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataag 76  Q
    |||||||||||| |||||||||||||||||| |  ||||||||  |||| || ||||||||    
T  19177104 ataaacacttgtcagattgtttgagagagctaatgaaaacaaccgatgacatgtccataag 19177044  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 39823171 - 39823199
Alignment:
Q  115 agcttatgaaaacaacttgtagcttatat 143  Q
    |||||||||||||||||||||||||||||    
T  39823171 agcttatgaaaacaacttgtagcttatat 39823199  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 40205038 - 40205141
Alignment:
Q  25 tgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttttccaacttatttctatatgctcttcacaggatagcttatgaa 124  Q
    ||||||||||||||||| || | | | ||||| ||||| | || |||||||  ||||||| | |||||||||||| ||||| ||  ||||||||||||||    
T  40205038 tgtgagattgtttgaga-agtttatataaacagcttataacatgtccataatctgttttc-agcttatttctataagctctcca--ggatagcttatgaa 40205133  T
Q  125 aacaactt 132  Q
    ||||||||    
T  40205134 aacaactt 40205141  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 1172 - 1213
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||||| |||||| ||||||||||||    
T  1172 tttatcttttgttatagaaatagcttatacataagcacttat 1213  T

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Target: scaffold0275 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 2803 - 2762
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| |||||||||||| |||||| ||||||||||||    
T  2803 tttatcttttgttatagaaatagcttatacataagcacttat 2762  T

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Target: scaffold0100 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 42589 - 42548
Alignment:
Q  158 tttatctttcgttatagaaataacttataaataagcacttat 199  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||    
T  42589 tttatcttttgttatagaaatgacttatacataagcacttat 42548  T

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