View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731_high_18 (Length: 407)
Name: NF1731_high_18
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 8879142 - 8879524
Alignment:
| Q |
16 |
atttgcacaatttgaacctaatccagtgttgattatttatgaatatataacttatataagaaccattgaacacctgaatattattacatataattaccaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8879142 |
atttgcacaatttgaacctaatccagtgttgattatttatgaatat--aacttatataagaaccattgaacacctgaatattattacatataattaccaa |
8879239 |
T |
|
| Q |
116 |
gaaagtaaaccaaaccaatgtaatttctttagtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8879240 |
gaaagtaaaccaaaccaatgtaatttctttagtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcg |
8879339 |
T |
|
| Q |
216 |
tagttcttcatcaaggtatgtagtaagcaaccatgattgagcatagctgttggagattgggatcttcaacggaggctgatcggaaattgtttgcacaacc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8879340 |
tagttcttcatcaaggtatgtagtaagcaaccatgattgagcatagctgttggagattgggatcttcaacggaggctgatcggaaattgtttgcacaacc |
8879439 |
T |
|
| Q |
316 |
gatgaggcagtgttttggatagaagtaaatatgtctttgaaagatgatagatcaatctcttgccctaaaaattccacaggttctg |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8879440 |
gatgaggcggtgttttggatagaagtaaatatgtctttgaaagatgatagatcaatctcttgccctaaaaattccacagtttctg |
8879524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 136 - 393
Target Start/End: Original strand, 8883059 - 8883316
Alignment:
| Q |
136 |
taatttctttagtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcgtagttcttcatcaaggtatg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
8883059 |
taatttctttagtttgtcaaaagagaacttccttccttgataagaacaaacacactgccaccatcgccccttgagatacgtagttcttcatcaaggtatg |
8883158 |
T |
|
| Q |
236 |
tagtaagcaaccatgattgagcatagctgttggagattgggatcttcaacggaggctgatcggaaattgtttgcacaaccgatgaggcagtgttttggat |
335 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8883159 |
tagtaagcaaccatgattgagcgttgtcgttggaaattgggatcttcaacggaggctgattggaaattgtttgcacgacagatgaggcagtgttttggac |
8883258 |
T |
|
| Q |
336 |
agaagtaaatatgtctttgaaagatgatagatcaatctcttgccctaaaaattccaca |
393 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||| |||| ||||||| |
|
|
| T |
8883259 |
agaagtaaatatgcctttgaaaggtgatagatcaatcttttgccccaaaacttccaca |
8883316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 8882981 - 8883027
Alignment:
| Q |
16 |
atttgcacaatttgaacctaatccagtgttgattatttatgaatata |
62 |
Q |
| |
|
||||||||||| || | |||||||||||||| ||||||||||||||| |
|
|
| T |
8882981 |
atttgcacaatatgtatctaatccagtgttgcttatttatgaatata |
8883027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University