View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_2 (Length: 543)
Name: NF1731_high_2
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 15431114 - 15430736
Alignment:
| Q |
14 |
aaatcaaatgaagcgaagaccgactttttatttatcacctcctcaattttaaaatggatgaaatgataaacaatatgcatcttgtctgctaaacaaatgc |
113 |
Q |
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| T |
15431114 |
aaatcaaatgaagcgaagaccaacttttcatttatcacc------attttaaaatggatgaaatgataaacaatatgcatcttgtctgctaaacagatgc |
15431021 |
T |
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| Q |
114 |
ccaaccactgcaaataagagaccagatgcgcccaaaaactccataacttacgaacagatgatctacactttactccttcccacaaccacttgcgcacaaa |
213 |
Q |
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| T |
15431020 |
ccaaccactgcaaataagaggccagatgcgcccaaaaactccacaacttacgaacagatgatctacactttactcctgcccacaaccactcacgcacaaa |
15430921 |
T |
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| Q |
214 |
catgaattagcctgaataattccatgtcgaatcacattctctttcgttggtaagtgattttgtaacatccttcatgtgagcaagagaaccttcaaaggag |
313 |
Q |
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| T |
15430920 |
catgaattagcctgaataattccatgtcgaatcagattctctttcgttggtaagtgattttgtaacatcctccatgtcagcaagagaaccttcaaaggag |
15430821 |
T |
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| Q |
314 |
ccactttatttcaaactatgtcgaagatgaaagatctatcactcggcaccactaaagaaagcatgtgataaacccttcaattact |
398 |
Q |
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| T |
15430820 |
ccactttatttcaaactatgtcgaagatgaaagatctatcactcgataccacgaaagaaagcatgtgataaatccttcaattact |
15430736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 411 - 529
Target Start/End: Complemental strand, 15430709 - 15430591
Alignment:
| Q |
411 |
gagaaaaggataaagaggatcactttgttgtagccctctttccaaattaaattcataagttggctcctcattaacgaggactgatgttgacgtaattaca |
510 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15430709 |
gagaaaaggataaagaggatcaatttgttgtagccctctttccaaattaaattcatcagttggctcctcattaacgaggactgatgttgtcgtaattaca |
15430610 |
T |
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| Q |
511 |
ccttccatgacccacttac |
529 |
Q |
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| T |
15430609 |
catttcatgacccacttac |
15430591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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