View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_20 (Length: 389)
Name: NF1731_high_20
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 28436493 - 28436717
Alignment:
| Q |
9 |
agatgaacacgttcgatttatcaagatgaaactttaaaacgacgatgatgtgataacagtttcctatatttggtcaatatagttccaaggaaccaatcga |
108 |
Q |
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| T |
28436493 |
agatgaacacgttcgattcactaagatgaaactttaaaacgacgatgatgtgaaaactgttccctatatttgatcaatatagttccaaggaaccaatcga |
28436592 |
T |
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| Q |
109 |
gatagacgcttccttattgaaatctatcgatactttcgggcaagttttattcgtctcaggatatttcaagaaattgtggcgtgcatggttgaacctgatt |
208 |
Q |
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| T |
28436593 |
gatagacgcttccttattgagatctatcaatattttcgggtaagttttattggtctcaggatatttcaagaaattgtagcgtgcatggttgaacctaatt |
28436692 |
T |
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| Q |
209 |
aagaaactagcttgccttgtccatg |
233 |
Q |
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| T |
28436693 |
aagaaactagcttgccttgtccatg |
28436717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 28436791 - 28436864
Alignment:
| Q |
304 |
tgatgaattacattattgaattttatttaatggagtgttagtcatgttttttcatggtttcattatgcatatgg |
377 |
Q |
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| T |
28436791 |
tgatgaattacattgttgaattttatttaatggagtgttagtcatgttttttcatggtttcattatgcatatgg |
28436864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 27760194 - 27760164
Alignment:
| Q |
319 |
ttgaattttatttaatggagtgttagtcatg |
349 |
Q |
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| T |
27760194 |
ttgaattttatttaatggagtgttagtcatg |
27760164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 30188354 - 30188465
Alignment:
| Q |
19 |
gttcgatttatcaagatgaaactttaaaacgacgatgatgtgataacagtttcct--atatttggtcaatatagttccaaggaaccaatcgagatagacg |
116 |
Q |
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| T |
30188354 |
gttcgatttacctagatgaaacttcaaaacaacgacgatatgagaaccattttctttatatttgatcaatatagttcgaagggaccaatcgagatagact |
30188453 |
T |
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| Q |
117 |
cttccttattga |
128 |
Q |
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| T |
30188454 |
ccaccttattga |
30188465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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