View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_21 (Length: 387)
Name: NF1731_high_21
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 57 - 260
Target Start/End: Complemental strand, 37259040 - 37258840
Alignment:
| Q |
57 |
tgtatcgtccaattttgtattttaaattattgaacgttgcagaaaaatatcaacaataattttggataaatatacgaaaaaattaattttaaattgtttg |
156 |
Q |
| |
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|||| ||||||||||| | ||| |||||||||||||| || |||||||| || |||||||||||| |||||||||||||| |||||| | ||||||||| |
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| T |
37259040 |
tgtaacgtccaattttaaagttttaattattgaacgttaca-aaaaatatgaaaaataattttggagaaatatacgaaaaa-ttaattatgaattgtttg |
37258943 |
T |
|
| Q |
157 |
ataaacaaacttcgaaaaaatcattaataattattatacatcccaaaaagttcataacagattaaaatactcaaaatcggacatttaataactactacca |
256 |
Q |
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|||||||||||||| ||| || |||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||| |||||||||||| |
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| T |
37258942 |
ataaacaaacttcgtcaaattctgaaataattattatacatcc-aaaaagttcataaccgattaaaatactcaaagatgggcatttagtaactactacca |
37258844 |
T |
|
| Q |
257 |
aaat |
260 |
Q |
| |
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|||| |
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| T |
37258843 |
aaat |
37258840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 294 - 380
Target Start/End: Complemental strand, 18016430 - 18016344
Alignment:
| Q |
294 |
cccaaaactatgaacctaacctaatggagtgatgcttctaaaatgtcgaaccccgcaactttctacgtcattagttgtcttcatctc |
380 |
Q |
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| T |
18016430 |
cccaaaactatgaacctaacctaatggagtgatgcttctaaaatgtcgaaccccacaactttctacgtcattagttgtcttcgtctc |
18016344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 286
Target Start/End: Complemental strand, 24209433 - 24209283
Alignment:
| Q |
134 |
aaaaattaattttaaattgtttgataaacaaacttcgaaaaaatcattaataattattatacatcccaaaaagttcataacagattaaaatactcaaaat |
233 |
Q |
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| T |
24209433 |
aaaaattaattacaaatcgtttgataaacaactttcataaaattcgtaattaattatt-tacaaccaaaata-ttcataaatgattaaaatactcaaact |
24209336 |
T |
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| Q |
234 |
cggacatttaataactactaccaaaataagtgaaccatgtatacattttgtct |
286 |
Q |
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| T |
24209335 |
tgggcatttaataactactaccaaaataagtgtactatgtatacattttgtct |
24209283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 18016462 - 18016431
Alignment:
| Q |
17 |
ctagccaaatgatctttatgaatgaatgtgaa |
48 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18016462 |
ctagccaaatgatctttatgaatgaatgtgaa |
18016431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 31628065 - 31627959
Alignment:
| Q |
273 |
tatacattttgtcttctatttcccaaaactatgaacctaacctaatggagtgatgcttctaaaatgtcgaaccccgcaactttctacgtcattagttgtc |
372 |
Q |
| |
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|||||||||||||| ||| | ||||| |||| ||||||||| |||| || ||||||||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
31628065 |
tatacattttgtctactaatatccaaa-ctatcaacctaacccaatgaagagatgcttctaaaatgtcaaaccccacaactttcgacgtcattagttgtc |
31627967 |
T |
|
| Q |
373 |
ttcatctc |
380 |
Q |
| |
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||| |||| |
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|
| T |
31627966 |
ttcgtctc |
31627959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 344
Target Start/End: Complemental strand, 1682558 - 1682284
Alignment:
| Q |
64 |
tccaattttgtattttaaattattgaacgttgcagaaaaatatcaacaataattttggataaatatacgaaaaaattaattttaaattgtttgataaaca |
163 |
Q |
| |
|
||||||||| | ||| ||||||||| |||| ||||||| || | |||||||||||| |||||| | |||||||||||| ||||| ||||||||||| |
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| T |
1682558 |
tccaattttaaagttttaattattgaccgttagcgaaaaatgtcgagaataattttggagaaatatgc-aaaaaattaattataaatcatttgataaaca |
1682460 |
T |
|
| Q |
164 |
aacttcgaaaaaatcattaataattattatacatcccaaaaagttcataacagattaaaatactcaaaatcggacatttaataactactaccaaaataag |
263 |
Q |
| |
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||||||| | || || | ||||| ||| ||||| ||||| || ||| |||| |||| |||||||| || |||||| |||||||||||||||| || |
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| T |
1682459 |
aacttcgtagaactcgt---aaattagtatgcatccgaaaaaaatcgtaaatgatttaaatgctcaaaattgggcatttagtaactactaccaaaattag |
1682363 |
T |
|
| Q |
264 |
tgaaccatgtatacattttgtcttctatttcccaaaactatgaacctaacctaatggagtgatgcttctaaaatgtcgaac |
344 |
Q |
| |
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| || || || |||||||||| ||| || || ||||||| |||| || |||||| |||||| |||| ||||||| |||| |
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| T |
1682362 |
agtactatataggcattttgtctactaatttcc-aaactatcaaccgaatctaatgaagtgatacttc-aaaatgttgaac |
1682284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 281
Target Start/End: Original strand, 31904246 - 31904454
Alignment:
| Q |
72 |
tgtattttaaattattgaacgttgcagaaaaatatcaacaataattttggataaatatacg---aaaaaattaattttaaattgtttgataaacaaactt |
168 |
Q |
| |
|
|||| ||| |||||||||||||| | || ||||||| ||||||||| || ||||||| |||||||||||| |||| |||||||||||||| || |
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| T |
31904246 |
tgtagttttaattattgaacgttaacggaagatatcaagaataattttagaaaaatatataggcaaaaaattaattataaac-gtttgataaacaaattt |
31904344 |
T |
|
| Q |
169 |
cgaaaaaatcattaataattattatacatcccaaaaagttcataacagattaaaatactcaaaatcggacatttaataactactaccaaaataagtgaac |
268 |
Q |
| |
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|| |||| |||| | |||||||| ||||||| ||||| ||||||| |||||||||||||||| || |||||||||| ||||||||||||||| | | |
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| T |
31904345 |
cgtaaaattcataattaattatt-tacatcctaaaaa-ttcataaataattaaaatactcaaaaaagg-catttaataaatactaccaaaataagagttc |
31904441 |
T |
|
| Q |
269 |
catgtatacattt |
281 |
Q |
| |
|
|||||||||||| |
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| T |
31904442 |
tatgtatacattt |
31904454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 31905944 - 31906041
Alignment:
| Q |
72 |
tgtattttaaattattgaacgttgcagaaaaatatcaacaataattttggataaatatacgaaaaaattaattttaaattgtttgataaacaaacttcg |
170 |
Q |
| |
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|||| ||| |||||||||||||| | || ||||||| |||||||||| | |||||| |||||| ||||||| ||||| |||||||||||||| |||| |
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| T |
31905944 |
tgtagtttgaattattgaacgttagcggaagatatcaagaataattttgaaaaaatatgcgaaaa-attaattataaatcgtttgataaacaaatttcg |
31906041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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