View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_26 (Length: 341)
Name: NF1731_high_26
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 32822132 - 32821961
Alignment:
| Q |
16 |
cacataagaagtctcaattgaggaaggaagaaccacaagtcaatggataattgttatatgtatatct--ctctctatgtttgagatcgttgtcacgaaga |
113 |
Q |
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| T |
32822132 |
cacataagaagtctcaattgaggaaggaagaaccacaggtcaatggataattgttatatgtatatatttctctctatgtttgagatcgttgtcactaaga |
32822033 |
T |
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| Q |
114 |
gactttattctaaaacttatgtatctctaacatctttgataaatcaaagatggcgtgtattctaggattata |
185 |
Q |
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| T |
32822032 |
gactttattctaaaacttatgtatctctaacatctttgataaatcaaagatggcgtgtattctaggattata |
32821961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 32821809 - 32821603
Alignment:
| Q |
16 |
cacataagaagtctcaattgaggaaggaagaaccacaagtcaatggataattgttatatgtatatctctct----------------ctatgtttgagat |
99 |
Q |
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| T |
32821809 |
cacataagaagtctcaattgaggaaggaagaaccacaagccaatggataattgttatatatatatatatatatatatatatatatatctatgtttgagat |
32821710 |
T |
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| Q |
100 |
cgttgtcacgaagagactttattctaaaacttatgtatctctaacatctttgataaatcaaagatggcgtgtattctaggattatagagatggtgttggt |
199 |
Q |
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| T |
32821709 |
cgttgtcactaagagactttattctgaaacttatgtatctctaacatctttgataaatcaaagatggcgtgtattctaggattatagagatggtgttggt |
32821610 |
T |
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| Q |
200 |
ctccctt |
206 |
Q |
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||||||| |
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| T |
32821609 |
ctccctt |
32821603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 32821541 - 32821474
Alignment:
| Q |
268 |
agacactctgatgtaagcttttttctaagggttctggccctctccagtcgttttattgatattcttcg |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||| |
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| T |
32821541 |
agacactctgatgtaagcttttttctaagggttctggctctctccaatcgttttgttgattttcttcg |
32821474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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