View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_27 (Length: 338)
Name: NF1731_high_27
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 2024480 - 2024167
Alignment:
| Q |
18 |
atttttgttattagttttttatggtcaatctcataatgtagcattttaatggaaaagaagatgtgtcgaagcttttcctgaaagtgatcagtcagttgga |
117 |
Q |
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| T |
2024480 |
atttctgttattatttttttacggtcaatctcataatgtagcattttaatggaaaagaagatgtgtcgaagcttttcctgaaagtgatcagtcagttgga |
2024381 |
T |
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| Q |
118 |
actactacatgttatgcaagagggatttttattcaatttgagcatcatcaagtttgaggttagtacaattggttctattaattctttttgttattttttg |
217 |
Q |
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| T |
2024380 |
actactacatgttatgtaagagggatttttattcaatttgagcatcatcaagtttgaggttagtacaattggttctattaactctttttgttattttttg |
2024281 |
T |
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| Q |
218 |
gataggttagtgttggaacaatataacatgttttatgaggaaagcatggatatgtttgcagttacatatacattgttttattttgaattcatacctttga |
317 |
Q |
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| T |
2024280 |
gataggttggtgttggaacaaaataacatgttttatgaggaaagcatggatatgtttgcagttacatatacattgttttattttgaattcatacctttga |
2024181 |
T |
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| Q |
318 |
ggattcctatgctt |
331 |
Q |
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| T |
2024180 |
ggattcctatgctt |
2024167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 22005407 - 22005350
Alignment:
| Q |
124 |
acatgttatgcaagagggatttttattcaatttgagcatcatcaagtttgaggttagt |
181 |
Q |
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| T |
22005407 |
acatgttaagcaagatgaactttcattcagtttgagcaacatcaagtttgaggttagt |
22005350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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