View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_31 (Length: 327)
Name: NF1731_high_31
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 36819870 - 36819582
Alignment:
| Q |
18 |
ttttagtgatccaccgatttggtagtatgaacattttagtgaggagggatacatcaaacccacgagtaactttgcatatagttactccgttcaataattc |
117 |
Q |
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| T |
36819870 |
ttttagtgatccaccgatttggtagtatgaacattttagtgaggagggatacatcgaacccacgagtaactttgcatatagttactccgttcaataattc |
36819771 |
T |
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| Q |
118 |
gttatcgacattatatttctccaatttagccgttaaattaaaagttctcattgagaagatcaattataaaaatgtttatagaattttaaaacagtttgat |
217 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
36819770 |
gttatcggcattatatttctccaatttgaccgttaaattaaaagttctcattgagaagatcaattataaaaatgtttatagaattttaaaactgtatgat |
36819671 |
T |
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| Q |
218 |
tgtttatttgatgacttcaattaaacgtacgacaaactttttatnnnnnnnnnnnctattgaatttaaacggtctaattacataactacaattgt |
312 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
36819670 |
tgtttatttgatgacttcaattgaacgtacgacaaacttttaa------aaaaaactattgaatttaaacggtctaattacataactacaattgt |
36819582 |
T |
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