View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_32 (Length: 324)
Name: NF1731_high_32
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 46037710 - 46037401
Alignment:
| Q |
1 |
gtactaacctatattattgataaaccttgttaattctgatcagcttgaacaaaatcattgagaagtatcgtcaatgttgcttcaacaatatgtctgagaa |
100 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46037710 |
gtactaacctatattattgacaaaccttgttcattctgatcagcttgaacaaaatcattgagaagtatcgtcaatgttgcttcaacaatatgtctgagaa |
46037611 |
T |
|
| Q |
101 |
tggtgacttaggagaacatgagtcacaggttttcccttctttgtcccatgtaacaaagttgattatgcttattttcataaatcgggtgcttcatatatag |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46037610 |
tggttacttaggagaacatgagtcacaggttttcccttctttgtcccatgtaacaaagttgattatgcttattttcataaatcgggtgcttcatatatag |
46037511 |
T |
|
| Q |
201 |
aattttactcttaacattttcgtgcattacagggcttattccaggagcttttgatgctaagagtcaagcatgaatctcttgcccggacacaaaggtattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46037510 |
aattttactcttaacattttcgtgcattacagggcttataccaggagcttttgatgctaagagtcaagcatgaatctcttgcccggacacaaaggtattg |
46037411 |
T |
|
| Q |
301 |
atactgatta |
310 |
Q |
| |
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|||||||||| |
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| T |
46037410 |
atactgatta |
46037401 |
T |
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