View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_33 (Length: 312)
Name: NF1731_high_33
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 68 - 290
Target Start/End: Complemental strand, 1489118 - 1488896
Alignment:
| Q |
68 |
tctcatgcttcaccaaatgtttgattaaggcactggaaaaatatggcaatagttgtcttggcctccatgaatctgttgtgcgggaaaaatctcttaagaa |
167 |
Q |
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| T |
1489118 |
tctcatgcttcaccaaatgtttcattaaggcactggaaaaatatggcaatagttgtcttggcctccatgaatctgttgtgcgggaaaaatttcttaagaa |
1489019 |
T |
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| Q |
168 |
atctctcttataattcataccaatttgaattgaccatgtgttggtttatctaagtaccactttgttgctttcccgattaatgaatgaaggcaacaatatc |
267 |
Q |
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| T |
1489018 |
atctctcttaaaattcataccaatttgaattgaccatgtgttggtttatctaagtaccgctttgttgctttcccgattaatgaatgaaggcaacaatatc |
1488919 |
T |
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| Q |
268 |
gtaaacacaatctcctcctcctc |
290 |
Q |
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| T |
1488918 |
gtaaacacaatctcctcctcctc |
1488896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 3381831 - 3381568
Alignment:
| Q |
20 |
tagcattaaggcatgattgaggcatcttttcagcatataattgtactgt-ctcatgcttcaccaaatgtttgattaaggcactggaaaaatatggcaata |
118 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||| |||||||||||| |
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| T |
3381831 |
tagcattatggcatgattgaggtatcttttcagcatataattgtacttttctcatgcttcaccaaatgtttcattaaggcacttgaagaatatggcaata |
3381732 |
T |
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| Q |
119 |
gttgtcttggcctccatgaatctgttgtgcgggaaaaatctcttaagaaatctctcttataattcataccaatttgaattgaccatgtgttggtttatct |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| | || |||||||||| |
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| T |
3381731 |
gttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattga-cttgagttggtttattc |
3381633 |
T |
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| Q |
219 |
aagtaccactttgttgctttcccgattaatgaatgaaggcaacaatatcgtaaacacaatctcctc |
284 |
Q |
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| T |
3381632 |
aagtaccgctctattgctttcccgattaatgaatg-agggaacaatatcgtaaacacaatctcctc |
3381568 |
T |
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