View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_34 (Length: 307)
Name: NF1731_high_34
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 15812099 - 15812368
Alignment:
| Q |
17 |
tacgaatgaaaaaataattaacggatacaaacatgaattaaatctacaaatagcgatccaaattaagatgtgctggaattggataatcataacctcaaag |
116 |
Q |
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| T |
15812099 |
tacgaatgaaaaaataattaacggatacaaacatgaattaaatctacaaatagcgatccaaattaagatgtgctggaattggataatcataacctc-aag |
15812197 |
T |
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| Q |
117 |
tttgttagtagtcaatatgaatatatcctttggacctttaaaatgtttgtttcttttttggattcaaactttttctaaaggagtccaaacatattttcaa |
216 |
Q |
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| T |
15812198 |
tttgttagtagtcaatatgaatatatcctttggacctttaaaatgtttgtttcttttttggattcaaactttttct---tgagtccaaacatattttcga |
15812294 |
T |
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| Q |
217 |
atcttctataaagtgaacgatattgtcaactatctaggtgaaacaatagttaaggtttcttcatcaacagaatt |
290 |
Q |
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| T |
15812295 |
atcttctataaagtgaacgatattgtcaactatctaggtgaaacaatagttagggtttcttcatcaacagaatt |
15812368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 15798908 - 15798968
Alignment:
| Q |
230 |
tgaacgatattgtcaactatctaggtgaaacaatagttaaggtttcttcatcaacagaatt |
290 |
Q |
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| T |
15798908 |
tgaaccataatgtcaactatctaggtgaaacaatagttatggtttcttcatcaacagaatt |
15798968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 15763097 - 15763178
Alignment:
| Q |
52 |
aattaaatctacaaatagcgatccaaattaagatgtgctggaattggataatcataacctcaaagtttgttagtagtcaatat |
134 |
Q |
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| T |
15763097 |
aattaaatatacaaattacaatccaaattaagatgtagtggaattggataatcataacttc-aagtttgttagtagtcaatat |
15763178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 15804537 - 15804582
Alignment:
| Q |
245 |
actatctaggtgaaacaatagttaaggtttcttcatcaacagaatt |
290 |
Q |
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| T |
15804537 |
actatctaggtgaaacaatagttatagtttcttcatcaacagaatt |
15804582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 15696366 - 15696414
Alignment:
| Q |
242 |
tcaactatctaggtgaaacaatagttaaggtttcttcatcaacagaatt |
290 |
Q |
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| T |
15696366 |
tcaactatctaggcgaaacaatagttatgggtacttcatcaacataatt |
15696414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 15763502 - 15763546
Alignment:
| Q |
245 |
actatctaggtgaaacaatagttaaggtttcttcatcaacagaat |
289 |
Q |
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| T |
15763502 |
actatctaggtgaaacaatagttagagttacttcatcaaccgaat |
15763546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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