View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_high_35 (Length: 303)

Name: NF1731_high_35
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_high_35
NF1731_high_35
[»] chr3 (1 HSPs)
chr3 (16-303)||(17351240-17351528)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 17351528 - 17351240
Alignment:
Q  16 atgaaaaagtgtgtcatggggtgtccatagaggtatattgtggaaggatcaagaagagagaaatttgtgttgctagattcgactaatcgaacaagagtat 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  17351528 atgaaaaagtgtgtcatagggtgtccatagaggtatattgtggaaggatcaagaagagagaaatttgtgttactagattcgactaatcgaagacgagtat 17351429  T
Q  116 agtattttaacaactcaaaatcagggtgagcacacatggtagatgtacatggtatgtcattgtatataatttatgataggacaatatatcattgtttgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  17351428 agtattttaacaactcaaaatcagggtgagcacacatggtagatgtaaatggtatgtcattgcatataatttatgataggacaatatatcatcgtttgat 17351329  T
Q  216 ccatgtgatttatcccatctaatagaaaaaagttttggtttttgtatcttcatattatggatcc-tttgtttcatataagatcattctc 303  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17351328 ccatgtgatttatctcatctaatagaaaaaagttttggtttttgtatcttcatattatggatccatttgtttcatataagatcattctc 17351240  T

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