View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_40 (Length: 252)
Name: NF1731_high_40
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_40 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 7726979 - 7727220
Alignment:
| Q |
11 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |
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| T |
7726979 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcga |
7727078 |
T |
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| Q |
111 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727079 |
aagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7727178 |
T |
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| Q |
211 |
gggatcggcccactaagactgttggaaccaaggtcaagtttt |
252 |
Q |
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| T |
7727179 |
gggatcggcccactaagactgttggaaccaaggtcaagtttt |
7727220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 7731139 - 7731380
Alignment:
| Q |
11 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
7731139 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcga |
7731238 |
T |
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| Q |
111 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
210 |
Q |
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| T |
7731239 |
aagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7731338 |
T |
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| Q |
211 |
gggatcggcccactaagactgttggaaccaaggtcaagtttt |
252 |
Q |
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| T |
7731339 |
gggatcggcccactaagactgttggaaccaaggtcaagtttt |
7731380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 7739297 - 7739538
Alignment:
| Q |
11 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
110 |
Q |
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| T |
7739297 |
cacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactggga |
7739396 |
T |
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| Q |
111 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
210 |
Q |
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||| ||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7739397 |
aagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtg |
7739496 |
T |
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| Q |
211 |
gggatcggcccactaagactgttggaaccaaggtcaagtttt |
252 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
7739497 |
gggatcgacccactaagactgttggaaccaaggtcgagtttt |
7739538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 7713462 - 7713696
Alignment:
| Q |
11 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
110 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||| || || |||||||| |
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| T |
7713462 |
cacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcga |
7713561 |
T |
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| Q |
111 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
210 |
Q |
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||| ||| ||| | | ||| |||||| |||||| |||||||||||| |||||| || ||||||| ||| || | || |||||||| ||| ||||| |
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| T |
7713562 |
aagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattca |
7713661 |
T |
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| Q |
211 |
gggatcggcccactaagactgttggaaccaaggtc |
245 |
Q |
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||||| ||||||||||| |||||||| |||||||| |
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| T |
7713662 |
gggattggcccactaaggctgttggagccaaggtc |
7713696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 7699117 - 7699351
Alignment:
| Q |
11 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
110 |
Q |
| |
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|||| |||||||||||||| |||||| | |||| |||||| |||| |||| ||| || |||||||| |||||||||||||| || ||||||||||| |
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| T |
7699117 |
cacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcga |
7699216 |
T |
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| Q |
111 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
210 |
Q |
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||| || ||| | ||||| ||||| |||||| |||||||||| ||||||||| ||||||| ||||| || || |||||||| ||||||||| | | |
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| T |
7699217 |
aagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggag |
7699316 |
T |
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| Q |
211 |
gggatcggcccactaagactgttggaaccaaggtc |
245 |
Q |
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| T |
7699317 |
gggattggcccactaaggctgttggaaccaaggtc |
7699351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 12908357 - 12908132
Alignment:
| Q |
11 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
110 |
Q |
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|||| |||||||||||||| |||||| ||||||| | ||||| |||| |||||||| |||||||||||||| |||||| |||| || || ||||| || |
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| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
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| Q |
111 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
210 |
Q |
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| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
12908158 |
T |
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| Q |
211 |
gggatcggcccactaagactgttgga |
236 |
Q |
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|||||||| |||||||| ||||||| |
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| T |
12908157 |
gggatcgggccactaaggttgttgga |
12908132 |
T |
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