View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731_high_41 (Length: 250)
Name: NF1731_high_41
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46236752 - 46236988
Alignment:
| Q |
1 |
taaggcttggtggttgttgtatttatttaatttctccaatattcaaactataccaaatgaataaatgtcaaaatattgacttgaatctatatacnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46236752 |
taaggcttggtggttgttgtatttatttaatttctcccatattcaaactataccaaatgaataaatgtcaaaatattgacttgaatctatatactttttt |
46236851 |
T |
|
| Q |
101 |
nnatagaataaatattcattgattaaattgtaatttacttgataatgatacttatagtttaactagaaacaaacatgacaagtatgtaccttttctcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46236852 |
ttatagaataaatattcattgattaaattgtaatttacttgataatgatacttatagtttaactagaaacaaacatgacaagtatgtaccttttctcttg |
46236951 |
T |
|
| Q |
201 |
gcatacaacctaaagcgccgccttccttttcctgcct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46236952 |
gcatacaacctaaagcgccgccttccttttcctgcct |
46236988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University