View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_49 (Length: 246)
Name: NF1731_high_49
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 30474337 - 30474120
Alignment:
| Q |
21 |
atgatcattgatcatcaaatgagtaaaatttgaagggacaaaaacacttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgc |
120 |
Q |
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| T |
30474337 |
atgatcattgatcatcaaatgagtaaaatttgaagggacaaaaacacttacacaaatcaattcttttcgagcatccaacaactcatcattactccgacgc |
30474238 |
T |
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| Q |
121 |
tccttaatgattagtgtttggttcaaatcttttaagtcttcaattaactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaagat |
220 |
Q |
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| T |
30474237 |
tccttaatgattagtgttaggttcaaatcatttaagtcttcaagtaactcttctttgtcacttaaatccatccgcaaagcatctacctctttcaaaagat |
30474138 |
T |
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| Q |
221 |
cctcatcttcttcatctc |
238 |
Q |
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|||||||||||||||||| |
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| T |
30474137 |
cctcatcttcttcatctc |
30474120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 30466046 - 30465905
Alignment:
| Q |
68 |
ttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaattaa |
167 |
Q |
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| T |
30466046 |
ttacatgaatcaatatttttcgagcatattgcaactcatcattactcttatgctccttaatgattagtttttggttaaattcttctaactcttcaagtga |
30465947 |
T |
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| Q |
168 |
ctcttctttgtcacttaaatccatccgcaaagcatctacctt |
209 |
Q |
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| T |
30465946 |
ctcttctttgtctctcaaattcatcagcaaagcatctacctt |
30465905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 30447249 - 30447098
Alignment:
| Q |
66 |
acttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaatt |
165 |
Q |
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|||||||| |||||||||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||| | | |||||||| || | |
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| T |
30447249 |
acttacactgatcaattcttttcgagcatcttgcagctcatcgttactcttacgctccttgatgattagtgtttggttcagtgcatctaagtcttgaagt |
30447150 |
T |
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| Q |
166 |
aactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaa |
217 |
Q |
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||| ||| || || |||||| |||| ||||| |||||||||| ||||||| |
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| T |
30447149 |
gactgttccttctcccttaaacccatatgcaaatcatctaccttcttcaaaa |
30447098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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