View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_5 (Length: 495)
Name: NF1731_high_5
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 22 - 483
Target Start/End: Original strand, 7684251 - 7684712
Alignment:
| Q |
22 |
accgctacttgaatttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcacttgctaccaaaattccactattgaaactaa |
121 |
Q |
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| T |
7684251 |
accgctacttgaatttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcacttgctaccaaaattcaactattgaaactaa |
7684350 |
T |
|
| Q |
122 |
agcttttccccatggattgcctagattgcaggctcctgctaaagccattgcctcctgttgctgccagcttgaaataatttaaaattaaccacatatagct |
221 |
Q |
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| T |
7684351 |
agcttttccccatggattgcctagattgcaggctcctgctaaagccattgcctcctgttgctgccagcttgaaataatttaaaattaaccacatatagct |
7684450 |
T |
|
| Q |
222 |
ccttaatacacacaacactccctctgcttccaaacatagcccaactttgtatttagccgagaacatctgaacttgaccatcaccagccgctgcaaccaca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7684451 |
ccttaatacacacaacactccctctgcttccaaacatagcccaactttgtatttagccgagaacatctgaacttgaccatcaccagccgctgcaaccaca |
7684550 |
T |
|
| Q |
322 |
acaaaaccacgatcgcaagacaccaaagcaacgcagtttaacaccagccacatattgatatccaggactccaacaacctcccttaagcgaaaagcaccaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7684551 |
acaaaaccacgatcgcaagacaccaaagcaacgcagtttaacaccagccacatattgatatccaggactccaacaacctcccttaagcgaaaagcaccaa |
7684650 |
T |
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| Q |
422 |
ggatgataataagagactgcaccatttttattcaaacattaataacgccaagacacgcccta |
483 |
Q |
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| T |
7684651 |
cgatgataataagagactgcaccatttttattcaaacattaataacgccaagacacgcccta |
7684712 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 7426185 - 7426108
Alignment:
| Q |
76 |
tctcaaatcaaagcac-ttgctaccaaaatt-ccactattgaaactaaagcttttccccatggattgcctagattgca |
151 |
Q |
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||||| ||||| |||| |||||||||| ||| ||||| ||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
7426185 |
tctcagatcaatgcacattgctaccaatatttccactcttgaagctaaagcttttccccatggtttgccaagattgca |
7426108 |
T |
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