View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_50 (Length: 239)
Name: NF1731_high_50
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_50 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 21582605 - 21582722
Alignment:
| Q |
16 |
caaagggaatatgaactaaatggaaccaaaactaagatagtggccatggagttggattatgatgggggtagtgtttttcgtaattttttgcaaatgtgtg |
115 |
Q |
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| T |
21582605 |
caaagggaatatgaacgaaatggagccaaaactaagatggtggccatggagttggattatgat-gggttagtgtttttcgtaattttttgcaaatgtgcg |
21582703 |
T |
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| Q |
116 |
attggttttatagtttata |
134 |
Q |
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||||||||||||||||||| |
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| T |
21582704 |
attggttttatagtttata |
21582722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 21583002 - 21583107
Alignment:
| Q |
133 |
tatttaattttaggtgttaatttggtttgannnnnnnnnnngttaggtttaaatttaaggtcactctttttggttaatatgctgaggaacttgatgtttt |
232 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
21583002 |
tatttaattttaggtgttaatttggtttgatttttttttt-gttaggtttaaatttaaggtcactctttttggacaatatactgaggaacttgatgtttt |
21583100 |
T |
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| Q |
233 |
tgttgct |
239 |
Q |
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||||||| |
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| T |
21583101 |
tgttgct |
21583107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 15886743 - 15886523
Alignment:
| Q |
16 |
caaagggaatatgaactaaatggaaccaaaactaagatagtggccatggagttggattatgatgggggtagtgtttttcgtaattttttgcaaatgtgtg |
115 |
Q |
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| T |
15886743 |
caaagggaatatgaactaaatggagccaaaactaagatggtggccatggaattggattacgat-gggttggtgtttttcataatattttgaaaatgtgat |
15886645 |
T |
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| Q |
116 |
attgg-ttttatagtttatatttaattttaggtgttaatttggtttgannnnnnnnnnngttaggtttaaatttaaggtcactctttttggttaatatgc |
214 |
Q |
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| T |
15886644 |
attggtttttattgtttatatttaattttaacagtttatttattttg---gttttttgtgttaggtttaaatttaaggtcactatatttggacaatatgc |
15886548 |
T |
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| Q |
215 |
tgaggaacttgatgtttttgttgct |
239 |
Q |
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| T |
15886547 |
tgaggaacttaatgcttttgttgct |
15886523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 26248074 - 26247853
Alignment:
| Q |
16 |
caaagggaatatgaactaaatggaaccaaaactaagatagtggccatggagttggattatgatgggggtagtgtttttcgtaattttttgcaaatgtgtg |
115 |
Q |
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|||||||||||||||| ||||||| | ||||||||||| ||||||||| | ||| |||| ||| ||| | ||||||||| |||| ||||| |||||||| |
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| T |
26248074 |
caaagggaatatgaacgaaatggagcaaaaactaagatggtggccatgaaattgaattacgat-gggttggtgtttttcataatattttgaaaatgtgtt |
26247976 |
T |
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| Q |
116 |
attgg-ttttatagtttatatttaattttaggtgttaatttggtttgannnnnnnnnnngttaggtttaaatttaaggtcactctttttggttaatatgc |
214 |
Q |
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||||| |||||| ||||||||||||||||| | | ||||||| ||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26247975 |
attggtttttatcgtttatatttaattttaagagctaatttgtttt--agtttttttttgttaggtttaaatttaaggtcactctatttggacaatatgc |
26247878 |
T |
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| Q |
215 |
tgaggaacttgatgtttttgttgct |
239 |
Q |
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||| |||||| ||| |||||||||| |
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| T |
26247877 |
tgatgaacttaatgcttttgttgct |
26247853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 593010 - 593074
Alignment:
| Q |
16 |
caaagggaatatgaactaaatggaaccaaaactaagatagtggccatggagttggattatgatgg |
80 |
Q |
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||||| |||||||||| |||| || |||||||||||| || ||||| || |||||||||||||| |
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| T |
593010 |
caaagagaatatgaacgaaattgattcaaaactaagatggtagccatcgaattggattatgatgg |
593074 |
T |
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