View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_high_52 (Length: 238)

Name: NF1731_high_52
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_high_52
NF1731_high_52
[»] chr4 (3 HSPs)
chr4 (1-216)||(46236516-46236731)
chr4 (26-58)||(26037563-26037595)
chr4 (26-58)||(41729508-41729540)
[»] chr7 (4 HSPs)
chr7 (26-61)||(48919301-48919336)
chr7 (26-58)||(28208386-28208418)
chr7 (26-58)||(40979986-40980018)
chr7 (26-58)||(45836540-45836572)
[»] chr6 (1 HSPs)
chr6 (26-58)||(12890767-12890799)
[»] chr5 (1 HSPs)
chr5 (26-58)||(5558333-5558365)
[»] chr3 (1 HSPs)
chr3 (26-58)||(52156142-52156174)
[»] chr2 (2 HSPs)
chr2 (26-58)||(12734892-12734924)
chr2 (26-58)||(31959713-31959745)
[»] chr1 (3 HSPs)
chr1 (26-58)||(25979289-25979321)
chr1 (26-58)||(38807729-38807761)
chr1 (26-58)||(39318321-39318353)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 46236731 - 46236516
Alignment:
Q  1 tacatggaccagagtacgccatagcccatagtggtctatcataaaccatatttggatcaaataacttggtttataatgttatattattcaaaaccaagtg 100  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46236731 tacatggatcaaagtacgccatagcccatagtgttctatcataaaccatatttggatcaaataacttggtttataatgttatattattcaaaaccaagtg 46236632  T
Q  101 attgaacacaagtagttaatgagctcgccctataacaaatcttaaagagaacctgaatttgagttcgattactagggattaatagggcctggctgaactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46236631 attgaacacaagtagttaatgagctcgccctataacaaatcttaaagagaacctgaatttgagttcgattactagggattaatagggcctggctgaactc 46236532  T
Q  201 cggattactagggccc 216  Q
    ||||||||||||||||    
T  46236531 cggattactagggccc 46236516  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 26037563 - 26037595
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  26037563 ccatagtgttctatcataaaccatatttggatc 26037595  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 41729508 - 41729540
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  41729508 ccatagtgttctatcataaaccatatttggatc 41729540  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 48919336 - 48919301
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatcaaa 61  Q
    |||||||||| |||||||||||||||||||||||||    
T  48919336 ccatagtggtttatcataaaccatatttggatcaaa 48919301  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 28208386 - 28208418
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  28208386 ccatagtgttctatcataaaccatatttggatc 28208418  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 40979986 - 40980018
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  40979986 ccatagtgttctatcataaaccatatttggatc 40980018  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 45836540 - 45836572
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  45836540 ccatagtgttctatcataaaccatatttggatc 45836572  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 12890799 - 12890767
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  12890799 ccatagtgttctatcataaaccatatttggatc 12890767  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 5558365 - 5558333
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  5558365 ccatagtgttctatcataaaccatatttggatc 5558333  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 52156142 - 52156174
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  52156142 ccatagtgttctatcataaaccatatttggatc 52156174  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 12734924 - 12734892
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  12734924 ccatagtgttctatcataaaccatatttggatc 12734892  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 31959745 - 31959713
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  31959745 ccatagtgttctatcataaaccatatttggatc 31959713  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 25979289 - 25979321
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  25979289 ccatagtgttctatcataaaccatatttggatc 25979321  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 38807729 - 38807761
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  38807729 ccatagtgttctatcataaaccatatttggatc 38807761  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 39318353 - 39318321
Alignment:
Q  26 ccatagtggtctatcataaaccatatttggatc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  39318353 ccatagtgttctatcataaaccatatttggatc 39318321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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