View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_high_6 (Length: 483)

Name: NF1731_high_6
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_high_6
NF1731_high_6
[»] chr8 (11 HSPs)
chr8 (13-465)||(7638335-7638781)
chr8 (238-295)||(13131409-13131466)
chr8 (238-296)||(16972407-16972465)
chr8 (238-295)||(32131419-32131476)
chr8 (227-269)||(3130011-3130053)
chr8 (238-288)||(19327853-19327903)
chr8 (227-269)||(41145437-41145479)
chr8 (238-271)||(13265487-13265520)
chr8 (244-314)||(28879168-28879234)
chr8 (238-286)||(16706150-16706198)
chr8 (238-286)||(19925438-19925486)
[»] chr2 (8 HSPs)
chr2 (239-295)||(4026905-4026961)
chr2 (238-286)||(34913440-34913488)
chr2 (238-286)||(27703508-27703556)
chr2 (218-269)||(37419922-37419974)
chr2 (241-295)||(13056380-13056434)
chr2 (238-295)||(4090468-4090525)
chr2 (210-313)||(8832540-8832635)
chr2 (256-297)||(17797335-17797376)
[»] chr5 (14 HSPs)
chr5 (238-296)||(29922239-29922297)
chr5 (238-295)||(17128257-17128314)
chr5 (210-295)||(41059711-41059792)
chr5 (238-295)||(22201986-22202043)
chr5 (210-296)||(42852104-42852186)
chr5 (238-286)||(10537269-10537317)
chr5 (238-286)||(26002985-26003033)
chr5 (238-285)||(42852011-42852058)
chr5 (238-295)||(1372043-1372100)
chr5 (238-295)||(3520553-3520609)
chr5 (238-295)||(24030194-24030251)
chr5 (238-286)||(2878726-2878774)
chr5 (242-290)||(11706972-11707020)
chr5 (237-269)||(43268670-43268702)
[»] chr4 (10 HSPs)
chr4 (238-295)||(29877618-29877675)
chr4 (238-295)||(8130467-8130524)
chr4 (238-287)||(12495696-12495745)
chr4 (238-295)||(23297417-23297474)
chr4 (238-286)||(18424327-18424375)
chr4 (238-288)||(948058-948108)
chr4 (238-295)||(42611917-42611975)
chr4 (236-269)||(28663433-28663466)
chr4 (238-295)||(34633378-34633435)
chr4 (238-286)||(38345871-38345919)
[»] chr6 (6 HSPs)
chr6 (240-295)||(3211053-3211108)
chr6 (238-286)||(30533968-30534016)
chr6 (217-295)||(9201643-9201717)
chr6 (229-286)||(10687295-10687352)
chr6 (242-286)||(2255722-2255766)
chr6 (221-297)||(21025139-21025215)
[»] scaffold0157 (1 HSPs)
scaffold0157 (238-287)||(24732-24781)
[»] chr7 (4 HSPs)
chr7 (238-295)||(38372537-38372594)
chr7 (238-286)||(44613523-44613571)
chr7 (238-283)||(21249147-21249192)
chr7 (210-267)||(38372641-38372694)
[»] chr3 (11 HSPs)
chr3 (238-295)||(23555463-23555520)
chr3 (237-286)||(40581126-40581175)
chr3 (239-286)||(29830821-29830868)
chr3 (210-298)||(52895324-52895408)
chr3 (238-295)||(10272101-10272158)
chr3 (237-286)||(33946591-33946640)
chr3 (242-283)||(50022010-50022051)
chr3 (238-295)||(53218090-53218147)
chr3 (238-286)||(30499954-30500002)
chr3 (238-286)||(36266232-36266280)
chr3 (233-269)||(41601376-41601412)
[»] chr1 (8 HSPs)
chr1 (238-286)||(10850121-10850169)
chr1 (238-286)||(20169252-20169300)
chr1 (238-286)||(46689600-46689648)
chr1 (218-286)||(22593338-22593402)
chr1 (240-286)||(16225497-16225543)
chr1 (238-295)||(4068094-4068151)
chr1 (242-295)||(35590109-35590162)
chr1 (218-295)||(48819390-48819463)


Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Complemental strand, 7638781 - 7638335
Alignment:
13 atactagaatagagaaataatgatgctattgctaagttgagtgaatagaggtccccaaactgcgataaattaaagcggtcgactattaagattttcactt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
7638781 atactagaatagagaaataatgatgctattgctaagttgagtgaatagaggtccccaaattgcgataaattaaagcggtcgactattaagattttcactt 7638682  T
113 ctcattaccttacatgttacaaaagccatctcttaggattataattatatcataccaaacatatctataagtttcttgtcaagtagtttatgaaaaccaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7638681 ctcattaccttacatgttacaaaagccatctcttaggattataattatatcataccaaacatatctataagtttcttgtcaagtagtttatgaaaaccaa 7638582  T
213 tcttcgttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaatatgtcaatccaaacg 312  Q
    | |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7638581 ttttcgttagtgagaacttattaat---aatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaatatgtcaatccaaacg 7638485  T
313 ggtcactaagctacttgaattagctataagctcatgaaaataagctcgtgttaccaaacggaacttttttaattataacagcttataagctataagttca 412  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
7638484 ggtcactaagctacttgaattag--ataagctcatgaaaataagctcgtgttaccaaacggaacttttttaattataccagcttataagctataag-tca 7638388  T
413 aattctccaatcaaggtcacaataaaaattacacacaaataaaaacatggaga 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
7638387 aattctccaatcaaggtcacaataaaaattacacacaaataaaaacatggaga 7638335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 13131466 - 13131409
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| ||||||||||||||   |||||||||||||||| ||||||    
13131466 aataatacataaaagcttatttatttgcataatttgttttgcataagctaaaaaataa 13131409  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 16972407 - 16972465
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaa 296  Q
    ||||||||||| ||||| ||||||||||| |||  |||||||||||||||| |||||||    
16972407 aataatacatacaagcttatttatttgcaaaaattgttttgcataagctaaaaaataaa 16972465  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 32131476 - 32131419
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||| |||||||||| |||||||||||||| | |||||||||||||| | ||||||    
32131476 aataatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaataa 32131419  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 3130053 - 3130011
Alignment:
227 aacttattaataataatacataaaagctgatttatttgcataa 269  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||    
3130053 aacttataaataataatacataaaaactgatgtatttgcataa 3130011  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 19327903 - 19327853
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaa 288  Q
    ||||||||||||||| | ||||||||||||||   ||||||||||||||||    
19327903 aataatacataaaagtttatttatttgcataagttgttttgcataagctaa 19327853  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 41145437 - 41145479
Alignment:
227 aacttattaataataatacataaaagctgatttatttgcataa 269  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||    
41145437 aacttatgaataataataaataaaagcttatttatttgcataa 41145479  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 13265520 - 13265487
Alignment:
238 aataatacataaaagctgatttatttgcataaac 271  Q
    ||||||||||||||||| ||||||||||||||||    
13265520 aataatacataaaagcttatttatttgcataaac 13265487  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 28879168 - 28879234
Alignment:
244 acataaaagctgatttatttgcataaacagttttgcataagctaataaataaatatgtcaatccaaacggg 314  Q
    ||||||||||| |||||||||||||| |  |||| |||||||||| ||||||    |||||||||||||||    
28879168 acataaaagcttatttatttgcataagctatttttcataagctaaaaaataa----gtcaatccaaacggg 28879234  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 16706150 - 16706198
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||||||||||||| |  |||||||||||||| | ||||||||||||||    
16706150 aataatacataaaaacatatttatttgcataagccgttttgcataagct 16706198  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 19925438 - 19925486
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||||||||| || ||| |||||||||||||||| ||| ||||||||||    
19925438 aataatacattaatgcttatttatttgcataaactgttatgcataagct 19925486  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 4026961 - 4026905
Alignment:
239 ataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||    
4026961 ataatacataaaagcttatttatttgcataagcagttttgcataagctcaaaaataa 4026905  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 34913440 - 34913488
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||||||    
34913440 aataatacataaaagcttatttatttgcataagctgttttgcataagct 34913488  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 27703508 - 27703556
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||| ||||||||| |||||||||||||| | ||||||||||||||    
27703508 aataatatataaaagcttatttatttgcataagctgttttgcataagct 27703556  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 37419974 - 37419922
Alignment:
218 gttagtgagaacttattaataataa-tacataaaagctgatttatttgcataa 269  Q
    ||||| |||||||||| |||||||| |||||||||||| ||||||||||||||    
37419974 gttagcgagaacttatgaataataaatacataaaagcttatttatttgcataa 37419922  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 13056380 - 13056434
Alignment:
241 aatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||||||||| || ||||||||||| | ||||||||| |||||| ||||||    
13056380 aatacataaaagcttatctatttgcataatccgttttgcatgagctaaaaaataa 13056434  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 4090525 - 4090468
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||||| |||| | |||||||||||||| | |||||||||||||| | ||||||    
4090525 aataatacatcaaagtttatttatttgcataagctgttttgcataagctcaaaaataa 4090468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 8832540 - 8832635
Alignment:
210 caatcttcgttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaatatgtcaatccaa 309  Q
    |||| ||||||||||| ||||||| ||| |    ||||||||||| |||||||||||||| |  |||| |||||||||| ||||||    ||||||||||    
8832540 caattttcgttagtgaaaacttatgaatta----acataaaagcttatttatttgcataagctatttttcataagctaaaaaataa----gtcaatccaa 8832631  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 17797335 - 17797376
Alignment:
256 atttatttgcataaacagttttgcataagctaataaataaat 297  Q
    |||||||||||||||| |||||||||||| ||| ||||||||    
17797335 atttatttgcataaactgttttgcataagttaaaaaataaat 17797376  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 29922239 - 29922297
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaa 296  Q
    |||||||||||||| || |||||||||||||||| |||||||||||||| | |||||||    
29922239 aataatacataaaaacttatttatttgcataaactgttttgcataagctcaaaaataaa 29922297  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 17128314 - 17128257
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||| | ||||||    
17128314 aataatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaataa 17128257  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 41059792 - 41059711
Alignment:
210 caatcttcgttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||| ||||||||||||||||||| ||| |    ||||||||||| |||||||||||||||| ||||| |||||||| | ||||||    
41059792 caattttcgttagtgagaacttatgaatta----acataaaagcttatttatttgcataaactgtttttcataagctcaaaaataa 41059711  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 22201986 - 22202043
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| |||||||| ||||| | |||||||||||||| | ||||||    
22201986 aataatacataaaagcttatttatttacataagctgttttgcataagctcaaaaataa 22202043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 42852104 - 42852186
Alignment:
210 caatcttcgttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaa 296  Q
    |||| ||||||||||||||||||| ||| |    ||||||||||| ||||| |||||||| | |||||||||||| ||| |||||||    
42852104 caattttcgttagtgagaacttatgaatta----acataaaagcttatttagttgcataagctgttttgcataagttaaaaaataaa 42852186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 10537269 - 10537317
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||    
10537269 aataatacataaaagcttatttatttgcataagctgttttacataagct 10537317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 26003033 - 26002985
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||||||||||||| || |||||||||||||||| |||||| |||||||    
26003033 aataatacataaaaacttatttatttgcataaactgttttgtataagct 26002985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 42852058 - 42852011
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagc 285  Q
    ||||||||||||||||| ||||||||| |||| | |||||||||||||    
42852058 aataatacataaaagcttatttatttgaataagctgttttgcataagc 42852011  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 1372043 - 1372100
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||||||||||   |||||||| ||||||| |||||||||||||| | ||||||    
1372043 aataatacataaaagtgtatttatttacataaactgttttgcataagctcaaaaataa 1372100  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 3520553 - 3520609
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||| |||||| | |||||||| ||||||| |||||||||||||||| ||||||    
3520553 aataatac-taaaaggttatttatttacataaactgttttgcataagctaaaaaataa 3520609  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 24030251 - 24030194
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| ||||||||| |||| | |||||| ||||||| | ||||||    
24030251 aataatacataaaagcttatttatttggataagctgttttgtataagcttaaaaataa 24030194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 2878726 - 2878774
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||| ||||||||| |||||||||||||| | |||| |||||||||    
2878726 aataatagataaaagcttatttatttgcataagctgtttagcataagct 2878774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 11706972 - 11707020
Alignment:
242 atacataaaagctgatttatttgcataaacagttttgcataagctaata 290  Q
    ||||||||||||| |||||||||||||  | ||||||||||||| ||||    
11706972 atacataaaagcttatttatttgcataggctgttttgcataagccaata 11707020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 43268670 - 43268702
Alignment:
237 taataatacataaaagctgatttatttgcataa 269  Q
    |||||||||||||||||| ||||||||||||||    
43268670 taataatacataaaagcttatttatttgcataa 43268702  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 29877675 - 29877618
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||| | ||||||    
29877675 aataatacataaaagcttatttatttgcataaattgttttgcataagctcaaaaataa 29877618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 8130524 - 8130467
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||| |||||||||| |||||||||||||| | |||||||||| ||||| ||||||    
8130524 aataatgcataaaagcttatttatttgcataagctgttttgcatatgctaaaaaataa 8130467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 12495696 - 12495745
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagcta 287  Q
    ||||||||||||||||| |||||||||||||| | ||||||| |||||||    
12495696 aataatacataaaagcttatttatttgcataagctgttttgcttaagcta 12495745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 23297474 - 23297417
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| |||||||||||||| |  ||||||||||||| | ||||||    
23297474 aataatacataaaagcttatttatttgcataagctattttgcataagctcaaaaataa 23297417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 18424327 - 18424375
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||||| ||||||||| |||||  ||||||||||||||    
18424327 aataatacataaaagcttatttatttgtataaattgttttgcataagct 18424375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 948108 - 948058
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaa 288  Q
    ||||||||||||||||| |||||||| ||||| |  |||||||||||||||    
948108 aataatacataaaagcttatttattttcataagctattttgcataagctaa 948058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 42611917 - 42611975
Alignment:
238 aataatacata-aaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||| |||||| ||||||||||||||   |||||||||||||||| ||||||    
42611917 aataatacatataaagcttatttatttgcataagttgttttgcataagctaaaaaataa 42611975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 28663466 - 28663433
Alignment:
236 ataataatacataaaagctgatttatttgcataa 269  Q
    ||||||||||||||||||| ||||||||||||||    
28663466 ataataatacataaaagctcatttatttgcataa 28663433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 34633435 - 34633378
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||| ||||||||| | ||||||||||||||   |||||||||||||||| ||||||    
34633435 aataaaacataaaagtttatttatttgcataagttgttttgcataagctaaaaaataa 34633378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 38345871 - 38345919
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||| |||||||||||| ||||||||| |||| | ||||||||||||||    
38345871 aatactacataaaagcttatttatttggataagctgttttgcataagct 38345919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 3211053 - 3211108
Alignment:
240 taatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||| |||||||||||||| | |||||||| ||||||| ||||||    
3211053 taatacataaaagcttatttatttgcataagctgttttgcacaagctaaaaaataa 3211108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 30534016 - 30533968
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||||| |||||||||||||| | |||||||| |||||    
30534016 aataatacataaaagcttatttatttgcataagctgttttgcacaagct 30533968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 9201717 - 9201643
Alignment:
217 cgttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| ||| |    ||||||||||| |||||||||||||| |  |||| |||||||||| ||||||    
9201717 cgttagtgagaacttatgaatta----acataaaagcttatttatttgcataagcgattttccataagctaaaaaataa 9201643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 10687352 - 10687295
Alignment:
229 cttattaataataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||| ||||| ||||||| |||||| |||||||||||||| | |||||| |||||||    
10687352 cttatgaataaaaatacatcaaagcttatttatttgcataagctgttttgaataagct 10687295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 2255766 - 2255722
Alignment:
242 atacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||    
2255766 atacataaaagctcatttatttgcataagtcgttttgcataagct 2255722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 21025215 - 21025139
Alignment:
221 agtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaat 297  Q
    ||||||||||||| |||||    ||||||||||| |||||||||||||| |  ||||  ||||||||| ||||||||    
21025215 agtgagaacttataaataaattaacataaaagcttatttatttgcataagctatttttgataagctaaaaaataaat 21025139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 24781 - 24732
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagcta 287  Q
    ||||||||||||||||| |||||||||||||| | ||||||| |||||||    
24781 aataatacataaaagcttatttatttgcataagctgttttgcttaagcta 24732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 38372594 - 38372537
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||||||| |||| |||||||||||||| | |||||||||||||| | ||||||    
38372594 aataatacataagagcttatttatttgcataagctgttttgcataagctcaaaaataa 38372537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 44613523 - 44613571
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||| ||||||||| |||||||||||||| | ||||||||||||||    
44613523 aataataaataaaagcttatttatttgcataagctgttttgcataagct 44613571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 21249192 - 21249147
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataa 283  Q
    |||||||||||||| || ||||||||||||||  ||||||||||||    
21249192 aataatacataaaaacttatttatttgcataagtagttttgcataa 21249147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 38372641 - 38372694
Alignment:
210 caatcttcgttagtgagaacttattaataataatacataaaagctgatttatttgcat 267  Q
    |||| ||||||||||||||||||| ||| |    ||||||||||||||||||||||||    
38372641 caattttcgttagtgagaacttatgaatta----acataaaagctgatttatttgcat 38372694  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 23555520 - 23555463
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| |||||||||||||||| |||| | ||||||| | ||||||    
23555520 aataatacataaaagcttatttatttgcataaactgtttcgtataagctcaaaaataa 23555463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 40581126 - 40581175
Alignment:
237 taataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||||||||||||||||| ||||||||||||||   ||||||||||||||    
40581126 taataatacataaaagcttatttatttgcataagttgttttgcataagct 40581175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 29830821 - 29830868
Alignment:
239 ataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||| || |||||||||||||||| |||||| |||||||    
29830821 ataatacataaaaacttatttatttgcataaactgttttgtataagct 29830868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 52895408 - 52895324
Alignment:
210 caatcttcgttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataaata 298  Q
    |||| |||||||||||||| |||| ||| |    ||||||||||| |||||||||| |||||| |||| |||||||| | |||||||||    
52895408 caattttcgttagtgagaatttatgaatta----acataaaagcttatttatttgcctaaacaatttttcataagctcaaaaataaata 52895324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 10272158 - 10272101
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||| | |||||||||||| |   |||||||||||||||| ||||||    
10272158 aataatacataaaagtttatttatttgcatgagttgttttgcataagctaaaaaataa 10272101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 33946591 - 33946640
Alignment:
237 taataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||||||| ||||||||| |||||||||||||| |  |||||||||||||    
33946591 taataataaataaaagcttatttatttgcataagctattttgcataagct 33946640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 50022010 - 50022051
Alignment:
242 atacataaaagctgatttatttgcataaacagttttgcataa 283  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
50022010 atacatcaaagcttatttatttgcataaactgttttgcataa 50022051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 53218090 - 53218147
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||||||||| || ||||||| ||||||   |||||||||||||||| ||||||    
53218090 aataatacataaaatcttatttattcgcataagttgttttgcataagctaaaaaataa 53218147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 30500002 - 30499954
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||  | |||||||||||||||| |||||| |||||||    
30500002 aataatacataaaaatttatttatttgcataaactgttttgtataagct 30499954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 36266280 - 36266232
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||| | |||||||||||||||| |||||  |||||||    
36266280 aataatacataaaagtttatttatttgcataaactgttttatataagct 36266232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 41601376 - 41601412
Alignment:
233 ttaataataatacataaaagctgatttatttgcataa 269  Q
    |||| |||||||||||||| |||||||||||||||||    
41601376 ttaagaataatacataaaaactgatttatttgcataa 41601412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 10850121 - 10850169
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||||| ||||||||||| ||||  |||||||||||||    
10850121 aataatacataaaagcttatttatttgcaaaaactattttgcataagct 10850169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 20169300 - 20169252
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||    
20169300 aataatacataaaagcttatttatttgcataagctgtttttcataagct 20169252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 46689600 - 46689648
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    ||||||| |||||||||  ||||||||||||||| ||||||||||||||    
46689600 aataataaataaaagcttttttatttgcataaactgttttgcataagct 46689648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 22593402 - 22593338
Alignment:
218 gttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||||||||||||||| ||| |    ||||||||||| |||||||||||||| | ||||||||||||||    
22593402 gttagtgagaacttataaatta----acataaaagcttatttatttgcataagctgttttgcataagct 22593338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 16225543 - 16225497
Alignment:
240 taatacataaaagctgatttatttgcataaacagttttgcataagct 286  Q
    |||||||||||| || |||||||| ||||||| ||||||||||||||    
16225543 taatacataaaaacttatttatttacataaactgttttgcataagct 16225497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 4068151 - 4068094
Alignment:
238 aataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||||||| ||||||||||| || |  ||||||| ||||||| ||||||    
4068151 aataatacataaaagcttatttatttgcacaagctattttgcaaaagctaaaaaataa 4068094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 35590162 - 35590109
Alignment:
242 atacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    ||||||||||||| ||||||||||||||   ||||| |||||||||| ||||||    
35590162 atacataaaagcttatttatttgcataagttgttttacataagctaaaaaataa 35590109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 48819390 - 48819463
Alignment:
218 gttagtgagaacttattaataataatacataaaagctgatttatttgcataaacagttttgcataagctaataaataa 295  Q
    |||||||||||||||| ||| |    ||||||||||| |||||||||||||| |  |||| |||||||||| ||||||    
48819390 gttagtgagaacttatgaatta----acataaaagcttatttatttgcataagctatttttcataagctaaaaaataa 48819463  T

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