View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_high_61 (Length: 223)
Name: NF1731_high_61
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 6182107 - 6182298
Alignment:
| Q |
17 |
actatcttttcaaagatattgggatcaacacttgaattaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182107 |
actatcttttcaaagatattgggatcaacacttgaatgaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcat |
6182206 |
T |
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| Q |
117 |
caccagcattatctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182207 |
caccagcattatctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
6182298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 6222282 - 6222473
Alignment:
| Q |
17 |
actatcttttcaaagatattgggatcaacacttgaattaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222282 |
actatcttttcaaagatattgggatcaacacttgaatgaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcat |
6222381 |
T |
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| Q |
117 |
caccagcattatctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
208 |
Q |
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| T |
6222382 |
caccagcattatctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
6222473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 44756088 - 44756041
Alignment:
| Q |
163 |
cattcacgatttcaaacacatcttgaaatctgaatatgactttcatct |
210 |
Q |
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| T |
44756088 |
cattcacgatttcaaacacatcttggaatatgaatataactttcatct |
44756041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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