View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_high_7 (Length: 480)

Name: NF1731_high_7
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_high_7
NF1731_high_7
[»] chr1 (10 HSPs)
chr1 (186-468)||(48152414-48152702)
chr1 (2-155)||(48152736-48152890)
chr1 (170-255)||(36418531-36418618)
chr1 (170-255)||(7955660-7955747)
chr1 (175-255)||(7840751-7840832)
chr1 (170-233)||(7994779-7994844)
chr1 (170-220)||(15257888-15257940)
chr1 (170-224)||(37441855-37441911)
chr1 (197-229)||(47603480-47603512)
chr1 (203-255)||(48575813-48575865)
[»] scaffold0316 (1 HSPs)
scaffold0316 (170-255)||(18721-18808)
[»] chr4 (16 HSPs)
chr4 (178-255)||(52705604-52705683)
chr4 (170-229)||(49820415-49820476)
chr4 (170-240)||(51409156-51409228)
chr4 (170-255)||(25133944-25134031)
chr4 (170-255)||(50605466-50605553)
chr4 (170-255)||(53369073-53369160)
chr4 (197-255)||(7505435-7505493)
chr4 (197-255)||(21436318-21436376)
chr4 (197-255)||(40797165-40797223)
chr4 (197-255)||(44792852-44792910)
chr4 (175-255)||(51994094-51994176)
chr4 (206-255)||(79771-79820)
chr4 (170-229)||(9469464-9469525)
chr4 (176-243)||(22720767-22720836)
chr4 (197-229)||(45674341-45674373)
chr4 (203-255)||(52812978-52813030)
[»] chr5 (12 HSPs)
chr5 (197-255)||(18879631-18879689)
chr5 (170-255)||(19283626-19283713)
chr5 (170-229)||(1841019-1841080)
chr5 (170-255)||(3805415-3805502)
chr5 (197-240)||(14501417-14501460)
chr5 (175-219)||(26297952-26297998)
chr5 (197-255)||(34856957-34857015)
chr5 (170-221)||(28430594-28430647)
chr5 (198-234)||(4984037-4984073)
chr5 (177-255)||(26217434-26217514)
chr5 (197-229)||(29322100-29322132)
chr5 (175-229)||(43385835-43385891)
[»] chr3 (6 HSPs)
chr3 (170-233)||(20407792-20407857)
chr3 (177-255)||(5418054-5418134)
chr3 (197-255)||(32688570-32688628)
chr3 (170-220)||(25252920-25252972)
chr3 (170-224)||(39471121-39471177)
chr3 (197-229)||(41609351-41609383)
[»] scaffold0106 (1 HSPs)
scaffold0106 (170-252)||(26507-26591)
[»] chr2 (6 HSPs)
chr2 (177-255)||(2647649-2647729)
chr2 (170-255)||(26435778-26435865)
chr2 (197-255)||(20986075-20986133)
chr2 (197-255)||(33830901-33830959)
chr2 (170-229)||(36538114-36538175)
chr2 (170-221)||(40675210-40675263)
[»] chr8 (5 HSPs)
chr8 (323-468)||(23693793-23693936)
chr8 (323-380)||(10292282-10292339)
chr8 (398-468)||(10292021-10292096)
chr8 (175-232)||(17865721-17865780)
chr8 (177-224)||(43966924-43966973)
[»] chr7 (9 HSPs)
chr7 (170-255)||(36926420-36926507)
chr7 (197-255)||(7443840-7443898)
chr7 (178-255)||(17026048-17026127)
chr7 (197-255)||(5795565-5795623)
chr7 (175-255)||(7539698-7539780)
chr7 (170-229)||(3931391-3931452)
chr7 (197-234)||(18250717-18250754)
chr7 (170-229)||(26215754-26215815)
chr7 (197-229)||(43052319-43052351)
[»] chr6 (6 HSPs)
chr6 (177-253)||(33109845-33109923)
chr6 (170-233)||(10346245-10346310)
chr6 (170-221)||(12428088-12428141)
chr6 (170-229)||(13311385-13311446)
chr6 (197-229)||(7957091-7957123)
chr6 (197-229)||(18961882-18961914)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 186 - 468
Target Start/End: Complemental strand, 48152702 - 48152414
Alignment:
Q  186 tcgagtttgagcgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcatccctataatttatgagagatacaaaacaaa 285  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48152702 tcgagtttgaacgaaccaattcttatcgagtcgaaccgaactcagacaagttcgattcaattcgactcagccctataatttatgagagatacaaaacaaa 48152603  T
Q  286 tatgagaatctctttatcaccatgaaccaannnnnnncatcttccacaacagtaccagactaaagaaaaccataaactcctacataaacccctctctctg 385  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48152602 tatgagaatctctttatcaccatgaaccaatttttttcatcttccacaacagtaccagactaaagaaaaccataaactcctacataaacccctctctctg 48152503  T
Q  386 ttctta------attcttattcttattctttgatttgtccaccttactgtccaatgtttccgtcttcgattccgactcagttcttcaat 468  Q
    ||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48152502 ttcttaattcttattcttattcttattctttgatttgtccaccttactgtccaatgtttccgtcttcgattccgactcagttcttcaat 48152414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 48152890 - 48152736
Alignment:
Q  2 tgtaggggaactagttttcttttgtttattatccgttagagtatgtattattctaccaaactacttaaaaattgattgaatatcaatgatttgagtttaa 101  Q
    ||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48152890 tgtaggggaactagtattcttttgtttattatctggtacagtatgtattattctaccaaactacttaaaaattgattcaatatcaatgatttgagtttaa 48152791  T
Q  102 tgagtcgaatcgagttgttcgtaaat-aattattaaacgagtctaactcgagctt 155  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  48152790 tgagttgaatcgagttgttcgtgaataaattattaaacgagtctaactcgagctt 48152736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 36418618 - 36418531
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||  || ||||||||| | |||||||||    
T  36418618 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctcaggcagattcgattcgactcgactcat 36418531  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 7955747 - 7955660
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||| ||||||| |||| |||||||||||||| |||||||| ||| |||| ||| |||||| || | |||||||||    
T  7955747 tcgtttcgaactcgaaccgagtttcgagccgaaccaattcttattgagtcgagtcgagctcagacagattcgactcgactcgactcat 7955660  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 7840832 - 7840751
Alignment:
Q  175 tcgaactcgaatcgagtttgagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||| |||| || |||| ||||||||||||| ||||||||| | |  ||| || |||||||||||| |||||||||    
T  7840832 tcgaactcgagtcgatttcgagccgaaccaattcttaacgagtcgagtcaagttcagacgaattcgattcaactcgactcat 7840751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 7994844 - 7994779
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaaca 233  Q
    |||| |||||||||| |||||||| |||| ||| ||||||||||||||| ||| ||||||||||||    
T  7994844 tcgtttcgaactcgagtcgagtttcgagctgaatcaattcttatcgagttgagtcgaactcaaaca 7994779  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 15257888 - 15257940
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgag 220  Q
    |||| ||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  15257888 tcgtttcgaactcgaaccgagtttcgagccgaaccaattcttatcgagtcgag 15257940  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 37441855 - 37441911
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccga 224  Q
    |||| ||||||||||  ||||||| |||| |||||||||||||||||||||||||||    
T  37441855 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccga 37441911  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 47603480 - 47603512
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||||||||||||||||||| ||||||||||||    
T  47603480 cgaaccaattcttatcgagttgagccgaactca 47603512  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 48575813 - 48575865
Alignment:
Q  203 aattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||| ||| |||| |||  |||||||| |||||||||||    
T  48575813 aattcttatcgagtcgagtcgagctcagacatgttcgattcgattcgactcat 48575865  T

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Target: scaffold0316 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 18808 - 18721
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||| ||| | |||||||||    
T  18808 tcgtgtcgaactcgaaccgagttttgagccgaaccaattcttatcgagtcgagccgagctcaaacagattcggttcgactcgactcat 18721  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 52705683 - 52705604
Alignment:
Q  178 aactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||| ||||| || | |||||||||    
T  52705683 aactcgaatcgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaagttcgactcgactcgactcat 52705604  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 49820476 - 49820415
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactca 229  Q
    |||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||    
T  49820476 tcgtgtcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagctca 49820415  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 51409156 - 51409228
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcga 240  Q
    |||| ||||||||||||||||||| |||| |||| |||||||||||||||||| ||| |||| |||| |||||    
T  51409156 tcgtgtcgaactcgaatcgagtttcgagccgaacaaattcttatcgagtcgagtcgagctcagacaagttcga 51409228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 25134031 - 25133944
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||| || |||| |||| ||||||||||||||||||||||| ||| |||| ||| |||||| || | |||||||||    
T  25134031 tcgtttcgaactcgaaccgggtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactcgactcat 25133944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 50605553 - 50605466
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |||| |||  |||| ||| | |||||||||    
T  50605553 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcat 50605466  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 53369160 - 53369073
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||| ||||||||||||  || ||||| ||| | |||||||||    
T  53369160 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagttgagccgaactcaggcagattcggttcgactcgactcat 53369073  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 7505493 - 7505435
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||||||||||||||| |||| |||| ||||| || | |||||||||    
T  7505493 cgaatcaattcttatcgagtcgagccgagctcagacaagttcgactcgactcgactcat 7505435  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 21436376 - 21436318
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| |||||||||||||||||||||||||||| |||  |||| ||| | |||||||||    
T  21436376 cgaatcaattcttatcgagtcgagccgaactcagacaggttcggttcgactcgactcat 21436318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 40797223 - 40797165
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||||| ||| |||| ||| |||||| || | |||||||||    
T  40797223 cgaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactcgactcat 40797165  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 44792852 - 44792910
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||||||||| |||| |||  |||| ||| | |||||||||    
T  44792852 cgaaccaattcttatcgagtcgagccgagctcatacaggttcggttcgactcgactcat 44792910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 51994176 - 51994094
Alignment:
Q  175 tcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||| |||||||| |||| ||||||||||||| ||||||||| ||| |||| ||  ||||||||| | |||||||||    
T  51994176 tcgaactcgagtcgagtttcgagctgaaccaattcttaacgagtcgagtcgagctcagacggattcgattcgactcgactcat 51994094  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 79820 - 79771
Alignment:
Q  206 tcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||| | |||  |||||||| |||||||||||    
T  79820 tcttatcgagtcgagccgaacttagacaggttcgattcgattcgactcat 79771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 9469525 - 9469464
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactca 229  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  9469525 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctca 9469464  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 22720836 - 22720767
Alignment:
Q  176 cgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattc 243  Q
    |||||||| ||||||||| |||| ||||||||||||||||||| ||||||| |||| || | ||||||||    
T  22720836 cgaactcgtatcgagtttcgagccgaaccaattcttatcgagttgagccgagctcagactagttcgattc 22720767  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 45674373 - 45674341
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||||||||||||||||||||||||||| ||||    
T  45674373 cgaaccaattcttatcgagtcgagccgagctca 45674341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 52813030 - 52812978
Alignment:
Q  203 aattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    ||||||||||||||||||||||||||| |||  |||| ||| | |||||||||    
T  52813030 aattcttatcgagtcgagccgaactcagacaggttcggttcgactcgactcat 52812978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 18879689 - 18879631
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||| | |||||||||    
T  18879689 cgaaccaattcttatcgagtcgagccgaactcagacagattcggttcgactcgactcat 18879631  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 19283626 - 19283713
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagcgaa-ccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    ||||||||||||||| |||||||| |||| || |||||||||||||||||||| ||| |||| | || |||||||| | |||||||||    
T  19283626 tcgtatcgaactcgagtcgagtttcgagctaaaccaattcttatcgagtcgagtcgagctcagataagttcgattctactcgactcat 19283713  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 1841019 - 1841080
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactca 229  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||| ||||    
T  1841019 tcgtatcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctca 1841080  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 3805415 - 3805502
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |||| |||  |||| ||| | |||||||||    
T  3805415 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcat 3805502  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 14501417 - 14501460
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcga 240  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||    
T  14501417 cgaaccgattcttatcgagtcgagccgagctcagacaaattcga 14501460  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 26297998 - 26297952
Alignment:
Q  175 tcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcga 219  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  26297998 tcgaactcgaatcgagtttcgagccgaaccaattcttatcgagtcga 26297952  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 34857015 - 34856957
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||||  |||||||| ||| |||||| || | |||||||||    
T  34857015 cgaaccaattcttatcgagtcgaatcgaactcagacagattcgactcgactcgactcat 34856957  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 28430647 - 28430594
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagc 221  Q
    ||||||||||||||| |||||||| |||| |||| |||||||||||||||||||    
T  28430647 tcgtatcgaactcgagtcgagttttgagctgaactaattcttatcgagtcgagc 28430594  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 4984037 - 4984073
Alignment:
Q  198 gaaccaattcttatcgagtcgagccgaactcaaacaa 234  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  4984037 gaaccaattcttatcgagtcgagccgagctcagacaa 4984073  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 26217514 - 26217434
Alignment:
Q  177 gaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||| |||||||| |||| |||||||||||||| ||||||| |||| |||| |||| ||||| || | |||||||||    
T  26217514 gaactcgagtcgagtttcgagccgaaccaattcttattgagtcgaaccgagctcagacaagttcgactcgactcgactcat 26217434  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 29322132 - 29322100
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||||||||||||||||||||||||||| ||||    
T  29322132 cgaaccaattcttatcgagtcgagccgagctca 29322100  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 43385891 - 43385835
Alignment:
Q  175 tcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactca 229  Q
    ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  43385891 tcgaactcgagccgagtttcgagctgaaccaattcttatcgagtcgagccgagctca 43385835  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 20407792 - 20407857
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaaca 233  Q
    ||||||||||||||| |||||||| |||| |||||||| |||||||||||||||||| ||||||||    
T  20407792 tcgtatcgaactcgagtcgagtttcgagccgaaccaatacttatcgagtcgagccgagctcaaaca 20407857  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 5418134 - 5418054
Alignment:
Q  177 gaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||| |||||||| |||| |||||||||||||||||||| ||||||||||| |||| ||||| || | |||||||||    
T  5418134 gaactcgagtcgagtttcgagccgaaccaattcttatcgagtcaagccgaactcagacaagttcgactcgactcgactcat 5418054  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 32688628 - 32688570
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||| ||||||||||||||||| |||| ||| ||||| ||||| |||||||||    
T  32688628 cgaaccaatttttatcgagtcgagccgagctcagacagattcggttcaactcgactcat 32688570  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 25252972 - 25252920
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgag 220  Q
    |||||| |||||||| |||||||| |||| |||||||||||||||||||||||    
T  25252972 tcgtattgaactcgagtcgagttttgagccgaaccaattcttatcgagtcgag 25252920  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 39471121 - 39471177
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccga 224  Q
    |||| ||||||||||  ||||||| |||| |||||||||||||||||||||||||||    
T  39471121 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccga 39471177  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 41609383 - 41609351
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||||||||||||||||||||||||||| ||||    
T  41609383 cgaaccaattcttatcgagtcgagccgagctca 41609351  T

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Target: scaffold0106 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 26591 - 26507
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgact 252  Q
    |||| |||||||||| |||| ||| |||| ||||||||||||||||||||||| ||| ||||||||  |||||||||| ||||||    
T  26591 tcgtttcgaactcgagtcgaatttcgagctgaaccaattcttatcgagtcgagtcgagctcaaacaggttcgattcaactcgact 26507  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 2647649 - 2647729
Alignment:
Q  177 gaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||  ||| |||||||||| || | |||||||||    
T  2647649 gaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagttcagacaaattcgactcgactcgactcat 2647729  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 26435865 - 26435778
Alignment:
Q  170 tcgtatcgaactcgaatcgagtttg--agcgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||| |||||||   | |||||||||||||||||| ||||||||| |||| ||| ||||| ||| | |||||||||    
T  26435865 tcgtgtcgaactcgaaccgagtttcgaaccgaaccaattcttatcgaatcgagccgagctcagacagattcggttcgactcgactcat 26435778  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 20986133 - 20986075
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||||||||| |||| |||  |||| ||| | |||||||||    
T  20986133 cgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcat 20986075  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 33830959 - 33830901
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||||||||| |||| |||  |||| ||| | |||||||||    
T  33830959 cgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcat 33830901  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 36538175 - 36538114
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactca 229  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  36538175 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctca 36538114  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 40675263 - 40675210
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagc 221  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||| ||||||    
T  40675263 tcgtatcgaactcgagtcgagtttcgagccgaaccaattcttatcgaatcgagc 40675210  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 468
Target Start/End: Original strand, 23693793 - 23693936
Alignment:
Q  323 catcttccacaacagtaccagactaaagaaaaccataaactcctacataaacccctctctctgttcttaattcttattcttattctttgatttgtccacc 422  Q
    ||||||| ||||  |||||| ||  |||||||||||||| ||||||||||| || |||||  |||||||||||||||| ||      |||||||||||||    
T  23693793 catcttctacaatggtaccaaacagaagaaaaccataaattcctacataaaacc-tctctgagttcttaattcttattttt------tgatttgtccacc 23693885  T
Q  423 ttactgtcca-----atgtttccgtcttcgattccgactcagttcttcaat 468  Q
    ||||||||||     |||||| |||||| |||||| ||||  |||||||||    
T  23693886 ttactgtccagatcgatgttttcgtctttgattccaactccattcttcaat 23693936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 10292339 - 10292282
Alignment:
Q  323 catcttccacaacagtaccagactaaagaaaaccataaactcctacataaacccctct 380  Q
    ||||||| ||||| ||| |||||| |||||||||||||| ||||||||||||| ||||    
T  10292339 catcttctacaacggtatcagactgaagaaaaccataaattcctacataaacctctct 10292282  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 468
Target Start/End: Complemental strand, 10292096 - 10292021
Alignment:
Q  398 attcttattctttgatttgtccaccttactgtcca-----atgtttccgtcttcgattccgactcagttcttcaat 468  Q
    ||||||||| |||||||||||||||||||||||||     |||||| |||||| |||||| ||||  |||||||||    
T  10292096 attcttattttttgatttgtccaccttactgtccagatcgatgttttcgtctttgattccaactccattcttcaat 10292021  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 17865721 - 17865780
Alignment:
Q  175 tcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaac 232  Q
    |||||||||| |||||||| |||| ||||||||||||||||||| |||||| ||||||||    
T  17865721 tcgaactcgagtcgagtttcgagctgaaccaattcttatcgagttgagccggactcaaac 17865780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 43966973 - 43966924
Alignment:
Q  177 gaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccga 224  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  43966973 gaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccga 43966924  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 36926507 - 36926420
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |||| |||  |||||||| | |||||||||    
T  36926507 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcgattcgactcgactcat 36926420  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 7443898 - 7443840
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||||||||| |||| ||| ||||| ||| | |||||||||    
T  7443898 cgaaccaattcttatcgagtcgagccgagctcagacagattcggttcgactcgactcat 7443840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 17026048 - 17026127
Alignment:
Q  178 aactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||| ||| |||| |||| ||||| || | |||||||||    
T  17026048 aactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacaagttcgactcgactcgactcat 17026127  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 5795565 - 5795623
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    |||||||||||||||||||||||||||| ||||  ||  |||||||| | |||||||||    
T  5795565 cgaaccaattcttatcgagtcgagccgagctcaggcaggttcgattcgactcgactcat 5795623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 7539698 - 7539780
Alignment:
Q  175 tcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactcat 255  Q
    ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |||| || | ||||| |||| ||| |||||    
T  7539698 tcgaactcgagccgagtttcgagctgaaccaattcttatcgagtcgagccgagctcagacgagttcgactcaactcggctcat 7539780  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 3931391 - 3931452
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactca 229  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  3931391 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctca 3931452  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 18250717 - 18250754
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactcaaacaa 234  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  18250717 cgaaccaattcttatcgagtcgagtcgagctcaaacaa 18250754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 26215815 - 26215754
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactca 229  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  26215815 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctca 26215754  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 43052351 - 43052319
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||||||||||||||||||||||||||| ||||    
T  43052351 cgaaccaattcttatcgagtcgagccgagctca 43052319  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 33109923 - 33109845
Alignment:
Q  177 gaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaacaaattcgattcaattcgactc 253  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||||||| |||| |||| ||||| || | |||||||    
T  33109923 gaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaagttcgactcgactcgactc 33109845  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 10346310 - 10346245
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagccgaactcaaaca 233  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||||| ||||||||| ||||||||    
T  10346310 tcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgaatcgagccgagctcaaaca 10346245  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 12428141 - 12428088
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gagc-gaaccaattcttatcgagtcgagc 221  Q
    ||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||    
T  12428141 tcgtatcgaactcgagtcgagtttcgagccgaatcaattcttatcgagtcgagc 12428088  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 13311446 - 13311385
Alignment:
Q  170 tcgtatcgaactcgaatcgagttt-gag-cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||| ||||||||||| ||||||| ||| |||||||||||||||||||||||| ||| ||||    
T  13311446 tcgtttcgaactcgaaccgagttttgagtcgaaccaattcttatcgagtcgagtcgagctca 13311385  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 7957123 - 7957091
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||||||||||||||||||||||||||| ||||    
T  7957123 cgaaccaattcttatcgagtcgagccgagctca 7957091  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 18961914 - 18961882
Alignment:
Q  197 cgaaccaattcttatcgagtcgagccgaactca 229  Q
    |||||||||||||||||||||||||||| ||||    
T  18961914 cgaaccaattcttatcgagtcgagccgagctca 18961882  T

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