View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_low_10 (Length: 442)

Name: NF1731_low_10
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_low_10
NF1731_low_10
[»] chr6 (11 HSPs)
chr6 (34-322)||(21972503-21972791)
chr6 (34-335)||(20205942-20206243)
chr6 (34-335)||(22099965-22100266)
chr6 (28-148)||(18997412-18997532)
chr6 (30-135)||(20238531-20238636)
chr6 (30-135)||(22132515-22132620)
chr6 (35-148)||(20128336-20128449)
chr6 (35-148)||(22204421-22204534)
chr6 (34-147)||(24384634-24384748)
chr6 (87-148)||(20086675-20086736)
chr6 (35-68)||(20086623-20086656)
[»] scaffold0264 (3 HSPs)
scaffold0264 (335-434)||(19370-19469)
scaffold0264 (35-148)||(16572-16685)
scaffold0264 (293-335)||(19311-19353)
[»] scaffold0074 (1 HSPs)
scaffold0074 (28-148)||(47256-47376)
[»] scaffold0007 (1 HSPs)
scaffold0007 (35-141)||(4775-4872)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 34 - 322
Target Start/End: Original strand, 21972503 - 21972791
Alignment:
Q  34 gtcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatgac 133  Q
    |||||| || |||||||||||||||||||| ||  | |  | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  21972503 gtcacctctacacatgaacaatccatagacggatacggacgaatttatactagtgactgtggtgttgtagaatttggtgttgcctatggcttttgatgac 21972602  T
Q  134 aatgaagagaagagttttttgagattgctttggaagttgtggctgggtgtggtaacattgataggacaatttgtattcagatataatggagagtcttgtg 233  Q
    ||||||  |||||| ||| ||||||||||||||||| ||  ||| ||| ||||||| ||||| |||||| ||||||||||| ||||||||||||||||||    
T  21972603 aatgaattgaagaggtttatgagattgctttggaaggtgctgcttggtttggtaacgttgatgggacaaattgtattcagaaataatggagagtcttgtg 21972702  T
Q  234 ccatagttgcacaaaagaggaatctaacaaggataaagatagataaaaggagaattgtagagtaagccatggaatttctttcttaatga 322  Q
    |||| |||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  21972703 ccattgttgcagaagagaggaatctaacaaggataaggatagataaaaggtgaattgtagagtaagccatggaatttcttttttaatga 21972791  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 34 - 335
Target Start/End: Original strand, 20205942 - 20206243
Alignment:
Q  34 gtcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatgac 133  Q
    |||||| || ||||||||| |||||||||| || || |  |||||||||| | |||||||   |||||||||||||||||| ||| ||||||||||||||    
T  20205942 gtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgac 20206041  T
Q  134 aatgaagagaagagttttttgagattgctttggaagttgtggctgggtgtggtaacattgataggacaatttgtattcagatataatggagagtcttgtg 233  Q
    |||||||||||||| |||  |||||||||||||||| ||  ||||||| ||||||| ||| | |||||| ||||||||| ||||||||||||||||||||    
T  20206042 aatgaagagaagaggtttaagagattgctttggaaggtgctgctgggtttggtaacgttgttgggacaaattgtattcaaatataatggagagtcttgtg 20206141  T
Q  234 cc---atagttgcacaaaagaggaatctaacaaggataaagatagataaaaggagaattgtagagtaagccatggaatttctttcttaatgagtctgttt 330  Q
    ||   ||||||||| |||||||||  |||| |   | || ||| || ||| | |||||| |||||||||||||||||||||||| |||||||||||||||    
T  20206142 ccatgatagttgcagaaaagaggaggctaata---acaaggatggagaaatgaagaattttagagtaagccatggaatttcttttttaatgagtctgttt 20206238  T
Q  331 gattt 335  Q
    |||||    
T  20206239 gattt 20206243  T

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Target: chr6; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 34 - 335
Target Start/End: Original strand, 22099965 - 22100266
Alignment:
Q  34 gtcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatgac 133  Q
    |||||| || ||||||||| |||||||||| || || |  |||||||||| | |||||||   |||||||||||||||||| ||| ||||||||||||||    
T  22099965 gtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgac 22100064  T
Q  134 aatgaagagaagagttttttgagattgctttggaagttgtggctgggtgtggtaacattgataggacaatttgtattcagatataatggagagtcttgtg 233  Q
    |||||||||||||| |||  |||||||||||||||| ||  ||||||| ||||||| ||| | |||||| ||||||||| ||||||||||||||||||||    
T  22100065 aatgaagagaagaggtttaagagattgctttggaaggtgctgctgggtttggtaacgttgttgggacaaattgtattcaaatataatggagagtcttgtg 22100164  T
Q  234 cc---atagttgcacaaaagaggaatctaacaaggataaagatagataaaaggagaattgtagagtaagccatggaatttctttcttaatgagtctgttt 330  Q
    ||   ||||||||| |||||||||  |||| |   | || ||| || ||| | |||||| |||||||||||||||||||||||| |||||||||||||||    
T  22100165 ccatgatagttgcagaaaagaggaggctaata---acaaggatggagaaatgaagaattttagagtaagccatggaatttcttttttaatgagtctgttt 22100261  T
Q  331 gattt 335  Q
    |||||    
T  22100262 gattt 22100266  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 18997412 - 18997532
Alignment:
Q  28 ggagacgtcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggctttt 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||  ||||||||||||||||||||| ||||||| |  |||||| |    
T  18997412 ggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacaccggtgactgtggtgttgtagaattcggtgttgacggtggcttct 18997511  T
Q  128 gatgacaatgaagagaagagt 148  Q
    |||||||||||||||| ||||    
T  18997512 gatgacaatgaagagaggagt 18997532  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 20238531 - 20238636
Alignment:
Q  30 agacgtcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttga 129  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| || | |||||||||||||||||||||  |||||| |||||||||||||    
T  20238531 agacgtcacccctgcacatgaacaatccatagacagaatcagtgggatttacactagtgactgtggtgttgtagaattcagtgttgtctatggcttttga 20238630  T
Q  130 tgacaa 135  Q
    ||||||    
T  20238631 tgacaa 20238636  T

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Target: chr6; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 22132515 - 22132620
Alignment:
Q  30 agacgtcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttga 129  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| || | |||||||||||||||||||||  |||||| |||||||||||||    
T  22132515 agacgtcacccctgcacatgaacaatccatagacagaatcagtgggatttacactagtgactgtggtgttgtagaattcagtgttgtctatggcttttga 22132614  T
Q  130 tgacaa 135  Q
    ||||||    
T  22132615 tgacaa 22132620  T

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Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 20128336 - 20128449
Alignment:
Q  35 tcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatgaca 134  Q
    ||||| ||||||||||||||||||||||||||||| |  || ||||||| | ||||||||||||||||||||| ||||||||| | |||||||||||| |    
T  20128336 tcacctctgcacatgaacaatccatagacagaatcagaggggtttatactagtgactgtggtgttgtagaattcggtgttgccgacggcttttgatgata 20128435  T
Q  135 atgaagagaagagt 148  Q
    | ||||||| ||||    
T  20128436 aagaagagaggagt 20128449  T

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Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 22204534 - 22204421
Alignment:
Q  35 tcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatgaca 134  Q
    ||||| ||||||||||||||||||||||||||||| |  || ||||||| | ||||||||||||||||||||| ||||||||| | |||||||||||| |    
T  22204534 tcacctctgcacatgaacaatccatagacagaatcagaggggtttatactagtgactgtggtgttgtagaattcggtgttgccgacggcttttgatgata 22204435  T
Q  135 atgaagagaagagt 148  Q
    | ||||||| ||||    
T  22204434 aagaagagaggagt 22204421  T

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Target: chr6; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 24384748 - 24384634
Alignment:
Q  34 gtcacccctgcacatgaacaatccatagacagaatccgtt-ggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatga 132  Q
    ||||||||||||||||||||||||||||||| |||| | | || ||||||| |||||||| |||||||||||||| ||||||||  | | ||||||||||    
T  24384748 gtcacccctgcacatgaacaatccatagacaaaatcagatagggtttatactaatgactgaggtgttgtagaattcggtgttgctgacgtcttttgatga 24384649  T
Q  133 caatgaagagaagag 147  Q
    ||| |||||||||||    
T  24384648 caaagaagagaagag 24384634  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 20086675 - 20086736
Alignment:
Q  87 tgactgtggtgttgtagaatttggtgttgcctatggcttttgatgacaatgaagagaagagt 148  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||    
T  20086675 tgactgtggtgttgtagaattcggtgttgccggtggcttttgatgacaatgaagagaggagt 20086736  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 20086623 - 20086656
Alignment:
Q  35 tcacccctgcacatgaacaatccatagacagaat 68  Q
    ||||||||||||||||||||||||||||||||||    
T  20086623 tcacccctgcacatgaacaatccatagacagaat 20086656  T

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Target: scaffold0264 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 19370 - 19469
Alignment:
Q  335 tacaattttatcaaggtgaacactatagcacattgtacgcaaaaagttatgtcctcttctatcatgagtattttgaaaaataaatgctacatagaattat 434  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19370 tacaattttatcaaggtgaacactatagcacgttgtacgcaaaaagttatgccctcttctatcatgagtattttgaaaaataaatgctacatagaattat 19469  T

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Target: scaffold0264; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 16572 - 16685
Alignment:
Q  35 tcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatgaca 134  Q
    ||||||||||||||||||||||||||||||||||| |  || |||       ||||||||||||||||||||| ||||||||| | |||||||||||| |    
T  16572 tcacccctgcacatgaacaatccatagacagaatcagaggggtttcctgtggtgactgtggtgttgtagaattcggtgttgccgacggcttttgatgata 16671  T
Q  135 atgaagagaagagt 148  Q
    | ||||||| ||||    
T  16672 aggaagagaggagt 16685  T

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Target: scaffold0264; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 19311 - 19353
Alignment:
Q  293 gagtaagccatggaatttctttcttaatgagtctgtttgattt 335  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  19311 gagtacgccatggaatttctttcttattgagtctgtttgattt 19353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 47376 - 47256
Alignment:
Q  28 ggagacgtcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggctttt 127  Q
    |||||| ||||||||||||||||||||||||||||||||||| |   | |||       ||||||||||||||||||||| |||||||||  ||||||||    
T  47376 ggagacatcacccctgcacatgaacaatccatagacagaatcagagtggtttcctgtggtgactgtggtgttgtagaattcggtgttgccggtggctttt 47277  T
Q  128 gatgacaatgaagagaagagt 148  Q
    |||||||||||||||| ||||    
T  47276 gatgacaatgaagagaggagt 47256  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 4872 - 4775
Alignment:
Q  35 tcacccctgcacatgaacaatccatagacagaatccgttggatttataccaatgactgtggtgttgtagaatttggtgttgcctatggcttttgatgaca 134  Q
    ||||||||||||||||||||||||||||||||||| |  || |||          ||||| |||||||||||| |||||||||| |||||||||||||||    
T  4872 tcacccctgcacatgaacaatccatagacagaatcagaggggtttc---------ctgtgatgttgtagaattcggtgttgcctgtggcttttgatgaca 4782  T

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