View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731_low_12 (Length: 434)
Name: NF1731_low_12
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 424
Target Start/End: Complemental strand, 42289234 - 42288836
Alignment:
| Q |
25 |
agaactaacaaat-agtcaatgcataggatagtaaatgggttaagccaccaac-atagaagtttaaggaaagactaatgtatttccctttcaaccacgtg |
122 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42289234 |
agaactaacaaattagtcaatgcctaagatagtaaacgggctaagccaccaaccattaaagtttaaggaaagactaatgtatttccctttcaaccacgtg |
42289135 |
T |
|
| Q |
123 |
aatgtcgatgagttaatcttatcgaccatatgtataattgagcataaaagatgttgaactaataatactagctaattttaacaggctcttaacaatgaac |
222 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42289134 |
aatgtcgatgacttaatcttgtccaccatatatataattgagcataaaaggtgttgaactaataatactagctaattttaacaggctcttaacaatgaac |
42289035 |
T |
|
| Q |
223 |
taataatatacatgggatgggaccctccnnnnnnntatatacatgagaccgtaaaagnnnnnnntaactaatatacatgggatggtcaggacattcatat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42289034 |
taataatatacatgggatgggaccctccaaaaaaatatat-catgggaccgtaaaagaaaaaaataactaatatacatgggatggtcaggacattcatat |
42288936 |
T |
|
| Q |
323 |
tgcatgaatgaataatatagagttgtgtaactaaaaaattgcatgaactatgggaataaaggtgttgaaccatagtctcattatcttctttgtatctctc |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42288935 |
tgcatgaatgaataatatagagttgtgtaactaaaaaattgcatgaactatggga--aaaggtgttgaaccatagtctcattatcttctttgtatctctc |
42288838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 35516819 - 35516703
Alignment:
| Q |
27 |
aactaacaaatagtcaatgcataggatagtaaatgggttaagccaccaac-atagaagtttaaggaaagactaatgtatttccctttcaaccacgtgaat |
125 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||| |||||||||||| ||| || ||||||| |||||||| || |||||| |||||||||||||| |
|
|
| T |
35516819 |
aactaacaattagccaatgcctaggatagtaaatggactaagccaccaaccataaaaatttaagggaagactaacgtgtttccccttcaaccacgtgaag |
35516720 |
T |
|
| Q |
126 |
gtcgatgagttaatctt |
142 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
35516719 |
gtcgatgacttaatctt |
35516703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 23050243 - 23050102
Alignment:
| Q |
26 |
gaactaacaaatagtcaatgcataggatagtaaatgggttaagccaccaac-atagaagtttaaggaaagactaatgtatttccctttcaaccacgtgaa |
124 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||||||||| |||||||||||| || | ||||||||| ||||||| || |||||| |||||||||||||| |
|
|
| T |
23050243 |
gaactaacaattagccaatgcctaggatagtaaatggactaagccaccaaccatgggagtttaagggaagactagcgtgtttccccttcaaccacgtgaa |
23050144 |
T |
|
| Q |
125 |
tgtcgatgagttaatcttatcgaccatatgtataattgagca |
166 |
Q |
| |
|
|||||||| |||||||| || || | || ||||||||||| |
|
|
| T |
23050143 |
agtcgatgacttaatcttgtccactacctgcataattgagca |
23050102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University