View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_13 (Length: 431)
Name: NF1731_low_13
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 110 - 424
Target Start/End: Original strand, 40802081 - 40802395
Alignment:
| Q |
110 |
ctcagcctatagtttgtgtatgtataatgtataagcaattgtgcatgttcaaggacagtcctagcttcttaacaaatatgactcatttctcgaaaacttt |
209 |
Q |
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| T |
40802081 |
ctcagcctatagtttgtgtatgtataatgtataagcaattgtgcatgttcaaggacagtcctagcttcttaacaaatatgactcatttctcgaaaacttt |
40802180 |
T |
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| Q |
210 |
atgatgttcaaagaacctaaactcgttacattgaatgctacgaccaacttttttaatacaagttttttagataatacccttaaaaatgagaagagagagg |
309 |
Q |
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| T |
40802181 |
atgatgttcaaagaacctaaactcgttacattgaatgctacgaccaacttttttaatacaagttttttagataatacccttaaaaatgagaagagagagg |
40802280 |
T |
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| Q |
310 |
ggtcttgtacgtatagcttccccttcttaacaacctcccactattttcatctcaatattggggtagctattaggtggtggtccctaaccgatnnnnnnnc |
409 |
Q |
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| T |
40802281 |
ggtcttgtacgtatagcttccccttcttaacaacctcccactattttcatctcaatatcggggtagctattaggtggtggtccctaaccgataaaaaaac |
40802380 |
T |
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| Q |
410 |
ccattgatgatgtcc |
424 |
Q |
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| T |
40802381 |
ccattgatgatgtcc |
40802395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 40801990 - 40802051
Alignment:
| Q |
18 |
acgtgcaacaatggtggagagagttagatctaagttgaaaaaattactctctcgagatctaaa |
80 |
Q |
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| T |
40801990 |
acgtgcaacaa-ggtggagagagttagatctaagttgagaaaattactctctcaagatctaaa |
40802051 |
T |
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