View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_14 (Length: 428)
Name: NF1731_low_14
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 32729178 - 32728779
Alignment:
| Q |
19 |
ggtattgcactccgtgtgccaacaccaaacgtttcggtggtggacctcgttgttcaagtctcaaagaagacatttgctgaagaagtgaatgaggctttca |
118 |
Q |
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| T |
32729178 |
ggtattgcactccgtgtgccaacaccaaatgtttcggtggtggacctcgttgttcaagtctcaaagaagacatttgctgaagaagtgaatgaggctttca |
32729079 |
T |
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| Q |
119 |
gagacagtgcagccaaggagctgagtggtattctctcagtttgtgatgagccacttgtgtctgtagattttaggtgcactgatgtgtcctcaaccgtgga |
218 |
Q |
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| T |
32729078 |
gagacagtgcagccaaggagctgagtggtattctctcagtttgtgatgagccacttgtgtctgtagattttaggtgcactgatgtgtcctcaaccgtcga |
32728979 |
T |
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| Q |
219 |
ttcgtcattgacaatggttatgggagatgacatggttaaggtgattgcttggtatgataatgaatggggttactcacaaagggttgttgatttggctgac |
318 |
Q |
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| T |
32728978 |
ttcgtcattgacaatggttatgggagatgacatggttaaggtgattgcttggtatgataatgaatggggttactcacaaagggttgttgatttggctgac |
32728879 |
T |
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| Q |
319 |
attgttgccaataactggaagtgagagccaaataatatttgctaattatatatatgtatgtaccatgtgccattgtaattttgtacacttcttgcttcat |
418 |
Q |
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| T |
32728878 |
attgttgccaataactggaagtgagagccgaataatatttgctaattatatatatgtatgtaccatgtgccattgtaattttgtacacttcttgcttcat |
32728779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 54181295 - 54181164
Alignment:
| Q |
160 |
tgtgatgagccacttgtgtctgtagattttaggtgcactgatgtgtcctcaaccgtggattcgtcattgacaatggttatgggagatgacatggttaagg |
259 |
Q |
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| T |
54181295 |
tgtgatgttccacttgtgtctgttgacttccgctgcaccgatgtttcttcaactattgactcttccttgactatggtcatgggagatgatatggtcaagg |
54181196 |
T |
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| Q |
260 |
tgattgcttggtatgataatgaatggggttac |
291 |
Q |
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| T |
54181195 |
tggttgcttggtatgacaatgaatggggttac |
54181164 |
T |
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