View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_18 (Length: 408)
Name: NF1731_low_18
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 34429428 - 34429145
Alignment:
| Q |
16 |
tcactatcggcgttaccacactagcacctatcaaattcggatgtttcttcacagatttcgctacagtttttgcagaatcaacaaccggttcggcttcgga |
115 |
Q |
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| T |
34429428 |
tcactatcggcgttaccacactagcacctatcaaattcggatgtttcttcacagatttcgctacagtttttgcagaatcaacaaccggttcggcttcgga |
34429329 |
T |
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| Q |
116 |
tgtttctaggttgagtaagggtttacgaattttggagaatgaaattgatttggagaagaatccggcagggagggtttcgatagagtgagaagatgaagtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34429328 |
tgtttctaggttgagtaagggtttacgaattttggagaatgaaattgatttggagaagaatccggcagggagggtttcgatagagtgagaagatgaagtt |
34429229 |
T |
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| Q |
216 |
gaaggagcgtcagacgttcgttgtcggatgttgaaaggaagtgaggggatggaagggaaggggaaagattcttgttcgggaaga |
299 |
Q |
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| T |
34429228 |
gaaggagcgtcagacgttcgttgtcggatgttgaaaggaagtgaggggatggaagggaaggggaaagattcttgttcgggaaga |
34429145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 33738248 - 33738529
Alignment:
| Q |
18 |
actatcggcgttaccacactagcacctatcaaattcggatgtttcttcac-agatttcgctacagtttttgcagaatcaacaaccggttcggcttcggat |
116 |
Q |
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||||| ||| |||||||||||| |||||||||||| ||||| || ||| | |||||| | |||||| | ||||||||||| |||| || || || |
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| T |
33738248 |
actattggcattaccacactagtacctatcaaattaggatgctttttccccagatttgatgatagttttagaggaatcaacaacaagttcagcctcagaa |
33738347 |
T |
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| Q |
117 |
gtttctaggttgagtaagggtttacgaattttggagaatgaaattgatttggagaagaatccggcagggagggtttcgatagagtgagaagatgaagttg |
216 |
Q |
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|||||| |||||||||| |||| ||||||||| ||| ||||||||||||||||||| |||| ||||||||||| ||| ||||||||||| ||||||| |
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| T |
33738348 |
tattctagattgagtaaggatttaagaattttggtgaagaaaattgatttggagaagaagccggaagggagggttttgattgagtgagaagacgaagttg |
33738447 |
T |
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| Q |
217 |
aaggagcgtcagacgttcgttgtcggatgttgaaaggaagtgaggggatggaagggaaggggaaagattcttgttcgggaag |
298 |
Q |
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|||||| | |||| |||||||||||||| |||||||| | || |||||||| |||| |||||||||| ||||| |||||| |
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| T |
33738448 |
aaggagtgccagaggttcgttgtcggattttgaaagggaaggatgggatggatgggagagggaaagattgttgtttgggaag |
33738529 |
T |
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