View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_20 (Length: 390)
Name: NF1731_low_20
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 12923978 - 12924341
Alignment:
| Q |
11 |
aagaactggcttgctgagatgattaagcaactatgcctacataacacttccatcaataaaatgaggtatagacccaaagaaaaatatacgagtacacaaa |
110 |
Q |
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| T |
12923978 |
aagaactggcttgctgagatgattaagcaactatgcctacataacacttccatcaataaaatgaggtatggacccaaagaaaaatatatgagtacacaaa |
12924077 |
T |
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| Q |
111 |
ctatgagcacaattgaatcataataacataaccaaagaaaactactggctttcgaatatacattttcaacacctactaacagcattaacagccacatcat |
210 |
Q |
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| T |
12924078 |
ctatgagcacaattgaatcataataacataatcaaagaaaactactggctttcgaatatacattttcaacacctactaacagcattaacagccacatcat |
12924177 |
T |
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| Q |
211 |
ccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaatggatattgtatcact |
310 |
Q |
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| T |
12924178 |
ccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaacggatattgtatcact |
12924277 |
T |
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| Q |
311 |
tgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtctacaatc |
374 |
Q |
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| T |
12924278 |
tgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtctacaatc |
12924341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 30791658 - 30791373
Alignment:
| Q |
34 |
taagcaactatgcctacataacacttccatcaataaaatgaggtatagacccaaagaaaaatat-acgagtacacaaactatgagcacaattgaatcata |
132 |
Q |
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| T |
30791658 |
taagaaactatgccaacacaacacttccatcaatcaaatgagatatagacccaaagaaaaatatcatgagtacacaagctatgaacacaattgaatcata |
30791559 |
T |
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| Q |
133 |
ataacataaccaaagaaaactactggctttcgaatatacattttcaacacctactaacagcattaa-cagccacatcatccaagtatatgaatgcaatta |
231 |
Q |
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| T |
30791558 |
ataacataaccaaagaaaactattggttttggaatatacattttcaacacctactaacaacattaatcagccacatcatccaagt-------tacagtaa |
30791466 |
T |
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| Q |
232 |
t-aaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatga |
323 |
Q |
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| T |
30791465 |
taaaaccttccatcaaaagactaatacaaattgagaacaaaccaaatcacctgaagtctaagaacagatattgtatcacttgcacatcaatga |
30791373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 22382395 - 22382461
Alignment:
| Q |
264 |
agaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaa |
330 |
Q |
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| T |
22382395 |
agaacaaaccaaatcacctcaagtctaagaacagatattgtatcacttgcacatcaatgtatagaaa |
22382461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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