View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731_low_23 (Length: 383)
Name: NF1731_low_23
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 679239 - 679593
Alignment:
| Q |
15 |
aatactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnn-tgaaaatgaggcatataactatatttcaaactcactataagt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
679239 |
aatactcaaatatacgcagcattcttctaattctcagaactagaaagaaaaaaaaaaatgaaaatgaggcatataactacatttcaaactcactataagt |
679338 |
T |
|
| Q |
114 |
tttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679339 |
tttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaa |
679438 |
T |
|
| Q |
214 |
acatatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaac |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679439 |
acatatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaac |
679538 |
T |
|
| Q |
314 |
acaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatga |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679539 |
acaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatga |
679593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 751046 - 751290
Alignment:
| Q |
15 |
aatactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcatataactatatttcaaactcactataagtt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
751046 |
aatactcaaatatacgcagcattcttctaattctaagaactagaaa--aaaaataaatgaaaatgaggcatagaactatatttcaaactcactataagtt |
751143 |
T |
|
| Q |
115 |
ttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751144 |
ttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaa |
751243 |
T |
|
| Q |
215 |
catatagtgcgctgattttagaactgcagggtttggagaattgaaat |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751244 |
catatagtgcgctgattttagaactgcagggtttggagaattgaaat |
751290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 259 - 368
Target Start/End: Original strand, 747402 - 747511
Alignment:
| Q |
259 |
aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc |
358 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
747402 |
aataatgtgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaacaacgaccttataattatc |
747501 |
T |
|
| Q |
359 |
aatgaaatga |
368 |
Q |
| |
|
|||||||||| |
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|
| T |
747502 |
aatgaaatga |
747511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 7324687 - 7324789
Alignment:
| Q |
266 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
365 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||| ||||||| |||||||| ||| |
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| T |
7324687 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaactttatttttggaagaaacaacaatgaccttatagttatcaattaaa |
7324786 |
T |
|
| Q |
366 |
tga |
368 |
Q |
| |
|
||| |
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|
| T |
7324787 |
tga |
7324789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 2632659 - 2632504
Alignment:
| Q |
99 |
aaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaa |
198 |
Q |
| |
|
||||||||||||||||| | |||||||||| | ||||| || | ||||||||||||| ||||| |||||||||| ||||| | |||| |||||||| |
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|
| T |
2632659 |
aaactcactataagtttcaaaaagctaaatat---gaattattcacacacatgtgaagtgtatga--ctatgataatacaaagaacgagtggtgaaagaa |
2632565 |
T |
|
| Q |
199 |
t----ctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaa |
259 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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|
| T |
2632564 |
aagacctgatcttcacaaaacaa----tgtgctgattttaaaactgcagggtttggagaattgaa |
2632504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 9594898 - 9595003
Alignment:
| Q |
263 |
atgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatg |
362 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| || |||| |||| || | ||| ||||||| ||||||||| |
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|
| T |
9594898 |
atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcatttttggaagcaaaatcaatgaccttatacttatcaatg |
9594997 |
T |
|
| Q |
363 |
aaatga |
368 |
Q |
| |
|
|||||| |
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|
| T |
9594998 |
aaatga |
9595003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 2491871 - 2491769
Alignment:
| Q |
266 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
365 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||| ||||| ||| || ||||| ||||||||| ||| ||||||| | |||||||||| |
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|
| T |
2491871 |
tgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaacaccaatgaccttataatcatcaatgaaa |
2491772 |
T |
|
| Q |
366 |
tga |
368 |
Q |
| |
|
||| |
|
|
| T |
2491771 |
tga |
2491769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 9562235 - 9562337
Alignment:
| Q |
266 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
365 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||| || |||| | ||||||||||| ||||||| |||||||||||| |
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|
| T |
9562235 |
tgggatgtcctctattctcttccaataatcagtccccaaagtataaacactaacttcatttttggtagaaacaacaatgaccttataattatcaatgaaa |
9562334 |
T |
|
| Q |
366 |
tga |
368 |
Q |
| |
|
||| |
|
|
| T |
9562335 |
tga |
9562337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 9566094 - 9566196
Alignment:
| Q |
266 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
365 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| || |||| || ||||||| || | ||||| |||||||||||| |
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|
| T |
9566094 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaacagaaatgagcttataattatcaatgaaa |
9566193 |
T |
|
| Q |
366 |
tga |
368 |
Q |
| |
|
||| |
|
|
| T |
9566194 |
tga |
9566196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 7443269 - 7443362
Alignment:
| Q |
275 |
ctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatga |
368 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||| ||||||| | || ||||||| | ||||||| |||| ||||||||||||||| |
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|
| T |
7443269 |
ctctattcttctccaataatcagtccccaaagcattaacaaaaacctcatatttggaagaaatagcaacaactttataattatcaatgaaatga |
7443362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 754888 - 754952
Alignment:
| Q |
274 |
cctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaaca |
338 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||| || |||| || ||||||| |
|
|
| T |
754888 |
cctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaaca |
754952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 2501944 - 2501844
Alignment:
| Q |
268 |
ggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatg |
367 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||||||||||||| | ||| || ||||| ||||||||||| ||||||| |||||||||||||| |
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|
| T |
2501944 |
ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaacaatgaccttataattatcaatgaaatg |
2501845 |
T |
|
| Q |
368 |
a |
368 |
Q |
| |
|
| |
|
|
| T |
2501844 |
a |
2501844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 365
Target Start/End: Complemental strand, 2631138 - 2631032
Alignment:
| Q |
259 |
aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc |
358 |
Q |
| |
|
|||||| ||||||| | ||||||||| ||||||||||| ||| ||||||| || | |||| || |||| ||||||||| ||| ||||||| ||||| |
|
|
| T |
2631138 |
aataatatgggatgtcgtctattcttttccaataatcagtccctaaagtataaagaaaaacttcatttttggaagaaacagcaatgaccttatacttatc |
2631039 |
T |
|
| Q |
359 |
aatgaaa |
365 |
Q |
| |
|
||||||| |
|
|
| T |
2631038 |
aatgaaa |
2631032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 2476426 - 2476377
Alignment:
| Q |
266 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacac |
315 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2476426 |
tgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacac |
2476377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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