View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_24 (Length: 379)
Name: NF1731_low_24
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 26891693 - 26892003
Alignment:
| Q |
21 |
aaagacttattcagaagacatgctttaggttcatgtcaagtaactaatactgcaaaatcaactattttctccacttcgatttctcacaatagacttggtc |
120 |
Q |
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| T |
26891693 |
aaagacttattcagaagacatgctttaagttcatgtcaagtaactaatactgcaaaattaactattttctccacttcgatttctcacaatagacttggtc |
26891792 |
T |
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| Q |
121 |
agatattcaatcttttagattttaaaattggttatctcccctttatttactttggagtaccaatttttaaaggcaagccaaaagtcaatcatctgcaacc |
220 |
Q |
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| T |
26891793 |
agatattcaatcttttagattttaaaattggttatctcccctttatttactttggagttccaatttttaaaggcaagctaaaagtcaatcatctgcaacc |
26891892 |
T |
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| Q |
221 |
aataactgacaagataaaactgaagttgtcaaattgaaaagctagtcttctcgccatggtcggtagagtccaattagtgaggtttatgattcaaagtatg |
320 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26891893 |
aataactgacatgataaaactgaagttgtcaaattggaaagctagtcttctcaccatggtcggtagagtccaattagtgaggtttatgattcaaagtatg |
26891992 |
T |
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| Q |
321 |
ctcacctatag |
331 |
Q |
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||||||||||| |
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| T |
26891993 |
ctcacctatag |
26892003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 26892255 - 26892291
Alignment:
| Q |
329 |
tagcataaaagaagagttcaaggttatcttagataat |
365 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26892255 |
tagcataaaagaagagttcaaggttatcttagataat |
26892291 |
T |
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